PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G175200.1.p
Common NameLOC101771845, SETIT_022327mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 384aa    MW: 39370.3 Da    PI: 5.8126
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G175200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.6e-18255289135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Seita.3G175200.1.p 255 CLHCETDKTPQWRTGPLGPKTLCNACGVRYKSGRL 289
                         99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.107.8E-15248286IPR013088Zinc finger, NHR/GATA-type
SMARTSM004012.3E-17249299IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.387249285IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.47E-15251312No hitNo description
CDDcd002022.63E-13254301No hitNo description
PROSITE patternPS003440255280IPR000679Zinc finger, GATA-type
PfamPF003207.7E-16255289IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEVAAECAGG ARVKKEADLF LVDDLLDLPC DEEEEVQEAV VEEGEGEGGK AGVCGSGAGG  60
EEGAAGNASN DSSTVTVLDS CSNSLSGLAD GDFSGGLVEP YDQLAELEWL SNYMGEDNFP  120
TEDLKKLQLI TGIPPASSSA AATASVPAPA AAAAPPAGGV LPPEAPVPGK ARSKRSRIAP  180
CSWASRLLVL PPPPASPPSP ASAAISPSES GTAAPAFPAK KPSKPAKKKE PLTTPAPNAA  240
AAAAAAASAG EGRRCLHCET DKTPQWRTGP LGPKTLCNAC GVRYKSGRLV PEYRPAASPT  300
FVVSKHSNSH RKVLELRRQK EAHLHPHHQY QPQPQAMGHV GAGAAGGLMH APSPLLFDGP  360
TGPLIGDDFL IHNRIGPDFR QLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G175200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961467.10.0GATA transcription factor 12
TrEMBLK3Z7070.0K3Z707_SETIT; GATA transcription factor
STRINGSi022327m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.13e-49GATA transcription factor 12