PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G158300.1.p
Common NameLOC101782792, SETIT_024576mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family RAV
Protein Properties Length: 382aa    MW: 40419.8 Da    PI: 10.3635
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G158300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2392e-1276124155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+ykGV   + +grW A+I++      r +r++lg+f  + eAa+a++ a+++++g
  Seita.3G158300.1.p  76 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGESEAARAYDVAAQRFRG 124
                         89****9888.8*********......44**********89*************98 PP
2B3941.1e-29206302189
                         EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                         f+k+ tpsdv+k++rlv+pk++ae+h            g  + +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL +gD 
  Seita.3G158300.1.p 206 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpaaaavtG--ECKGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDA 294
                         89***************************8888776532..23889********************************************* PP

                         EEEEE-SSSE CS
                  B3  80 vvFkldgrse 89 
                         v F+++   +
  Seita.3G158300.1.p 295 VGFYRSA--G 302
                         ****543..2 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.8E-876124IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-1676132IPR016177DNA-binding domain
CDDcd000181.35E-2276132No hitNo description
Gene3DG3DSA:3.30.730.109.2E-2077132IPR001471AP2/ERF domain
SMARTSM003801.1E-2677138IPR001471AP2/ERF domain
PROSITE profilePS5103219.94177132IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.1E-39197319IPR015300DNA-binding pseudobarrel domain
CDDcd100174.12E-28204307No hitNo description
SuperFamilySSF1019365.89E-29204304IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.943206314IPR003340B3 DNA binding domain
PfamPF023621.7E-26206302IPR003340B3 DNA binding domain
SMARTSM010191.5E-21206312IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDSTSCLVDD SSSAASTGKK QAPASAPSSR PLQRVGSGAS AVMDAAEPGA EADSGGAARA  60
GGGGGGAAVG GKLPSSKYKG VVPQPNGRWG AQIYERHQRV WLGTFTGESE AARAYDVAAQ  120
RFRGRDAVTN FRPLAESDPE AAAELRFLAS RSKAEVVDML RKHTYLEELA QNRRAFAAAS  180
PSPPPKNNPS SPAAASSAAA AREHLFDKTV TPSDVGKLNR LVIPKQHAEK HFPLQLPAAA  240
AVTGECKGVL LNFEDAAGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKGLH AGDAVGFYRS  300
AGKQLFIDCK VRPKTTAATT PPPVKAVRLF GVDLLTAARP AAALPKQEEM VAVTNKRARD  360
AIAASTPHMV FKKQCIDFAL T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-4820332211127DNA-binding protein RAV1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G158300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0419620.0BT041962.2 Zea mays full-length cDNA clone ZM_BFb0089O18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961326.10.0AP2/ERF and B3 domain-containing protein Os05g0549800
SwissprotQ6L4H40.0Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLK3ZDE00.0K3ZDE0_SETIT; Uncharacterized protein
STRINGSi024576m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-105related to ABI3/VP1 2
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]