PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G003700.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 711aa    MW: 75546.5 Da    PI: 6.1488
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G003700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix100.11.9e-31525609186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         rW+k+ev aLi++r+ +e r+++  lk+plWeevs++m++ g+ rs+k+Ckekwen+nk+++k ke+ kkr + + +tcpyfd+l+
  Seita.1G003700.1.p 525 RWPKHEVEALIRVRTGLEGRFQEPGLKGPLWEEVSSRMAAAGYGRSAKRCKEKWENINKYFRKAKESGKKR-PAHAKTCPYFDELD 609
                         8********************************************************************98.99999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0042522584IPR001005SANT/Myb domain
PROSITE profilePS500907.248524582IPR017877Myb-like domain
CDDcd122038.96E-30524589No hitNo description
PfamPF138378.7E-23524611No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MQSGYGGVSE FQQFIMDGGF AMSAPPPQQQ PPQPAAAPEL GGPFRYQPLH HHALPPQHHH  60
HHHAPHMPPH FAHFGAAPPA QSQAGIPFTQ QLLHQAAAAG HHLQLFHEQQ QHHHKPPPQQ  120
PAPARWAPQH HHQQQHQQPH HHQQHHLGFD VEAVPESSGA GAGSAASGGA APPGVPPFLA  180
AAMNFKLAVD AGGGSGATGG TDDALNDGGG GAGGGMMLHV GGGDDEAATE SRLRRWTGDE  240
ETSIKEPTWR PLDIDYLHST SSSKRAPGKE KVATPESPAP PAAAAANYFK KGDDNAAAAA  300
ASAASAGGGN YKLFSELEAI YKPGSSGAQT GSGSGLTGDD NAILEPAMAD LPGVAAADAP  360
QLNASETSAG EDAAAVVQPP QPPADASRRK RKRRRQEQLS ASASFFERLV QRLMEHQESL  420
HRQFLDAMER RERERAARDE AWRRQEADKF AREATARAQD RASAAAREAA IINYLEKISG  480
ETIALPPASG DDTSMSQDAA AGKELVPYEG GGGGGDTLHL MSTSRWPKHE VEALIRVRTG  540
LEGRFQEPGL KGPLWEEVSS RMAAAGYGRS AKRCKEKWEN INKYFRKAKE SGKKRPAHAK  600
TCPYFDELDR LYSRTAGATG AGGSNNNAGD EAAKASSELL DAVVKYPDAH GGPPGFMFDR  660
ERQNEGNGNG GAEDGNDDDD GIAKRRAGGD DQEQEQDDEV ESHGHEDEDE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1387392RRKRKR
2388393RKRKRR
3388394RKRKRRR
4389394KRKRRR
5390394RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G003700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0883331e-151BT088333.2 Zea mays full-length cDNA clone ZM_BFc0144A13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951198.10.0trihelix transcription factor GTL1-like
TrEMBLA0A368PHC90.0A0A368PHC9_SETIT; Uncharacterized protein
STRINGGRMZM2G037128_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63993547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-39Trihelix family protein