 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | 676792470 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
||||||||
| Family | TCP | ||||||||
| Protein Properties | Length: 3160aa MW: 353046 Da PI: 6.9634 | ||||||||
| Description | TCP family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | TCP | 85.7 | 1.1e-26 | 43 | 127 | 3 | 87 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87
+kdrhsk+ T++g+RdRRvRls ++a +f dLq++LG+d++ k++eWL+++ak +i +l+++ ++++ ++++++s++ + s
676792470 43 SGKDRHSKVFTSKGPRDRRVRLSGSTALQFCDLQNRLGYDQPNKAVEWLIKAAKDSISQLPSSLNITNFPITDDKNQSQTLAGAS 127
68*************************************************************7777755533333333222111 PP
| |||||||
| 2 | TCP | 101.9 | 1.1e-31 | 153 | 290 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.....kaaksaa. 95
g++drh k+ T++g+RdRR Rls+++a++f+dLqd+LG+d++sk++eWL+++a+ +i el+++ ++++ ++++++++++ + s+ ++ +++a
676792470 153 SGGEDRHGKVFTSKGLRDRRARLSLSTAIQFYDLQDRLGYDRPSKAVEWLIKAAEDSISELPSL-NNTNFPMTDDENQNQTLTGASAaaataSSLSKSAc 251
5789************************************************************.33333343333333333222224566655556665 PP
TCP 96 kskksqksaasalnlak.esrakarararertrekmrik 133
+sk+++++++s l+l++ e r ka++ ++t+e+ ++
676792470 252 SSKSDTSKNSSGLSLSRsERRDKASEGTVKETKERDGNS 290
777777777888999997888888888878888877666 PP
| |||||||
| 3 | B3 | 49.8 | 6.2e-16 | 528 | 637 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
f+k lt+sd ++++ lv+ + + +g++e + l++ede+g+ W++ ++y + s+ry ltkGW+++ k+++L +gDfv F+++ +
676792470 528 FQKYLTTSDLSNLDSLVVAVDEDSGKyvrsatatatatvDGDTE--RILQVEDEEGKLWQFGFSYLNVSQRYELTKGWSNYIKEKQLGAGDFVFFQRHCT 625
78888999999998888877653333477778888887766644..48************************************************9988 PP
SEE..EEEEE-S CS
B3 88 sefelvvkvfrk 99
++ +l++++ r+
676792470 626 DSSRLFIGFKRR 637
777789888776 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03634 | 4.6E-27 | 43 | 122 | IPR005333 | Transcription factor, TCP |
| PROSITE profile | PS51369 | 26.537 | 44 | 102 | IPR017887 | Transcription factor TCP subgroup |
| Pfam | PF03634 | 1.6E-30 | 155 | 278 | IPR005333 | Transcription factor, TCP |
| PROSITE profile | PS51369 | 28.054 | 155 | 213 | IPR017887 | Transcription factor TCP subgroup |
| Gene3D | G3DSA:2.40.330.10 | 6.2E-18 | 522 | 637 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 4.51E-13 | 523 | 633 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 2.75E-12 | 527 | 635 | No hit | No description |
| PROSITE profile | PS50863 | 11.533 | 528 | 638 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 5.9E-5 | 528 | 638 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 9.0E-13 | 528 | 637 | IPR003340 | B3 DNA binding domain |
| SMART | SM00255 | 3.6E-4 | 707 | 847 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
| Pfam | PF01582 | 4.2E-16 | 716 | 826 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
| SuperFamily | SSF52200 | 1.7E-11 | 719 | 822 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
| SuperFamily | SSF52540 | 9.77E-39 | 867 | 1114 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF00931 | 4.1E-21 | 875 | 1122 | IPR002182 | NB-ARC |
| Gene3D | G3DSA:3.40.50.300 | 6.4E-5 | 887 | 1033 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| PRINTS | PR00364 | 4.5E-19 | 888 | 903 | No hit | No description |
| PRINTS | PR00364 | 4.5E-19 | 964 | 978 | No hit | No description |
| PRINTS | PR00364 | 4.5E-19 | 1055 | 1069 | No hit | No description |
| SuperFamily | SSF46785 | 2.72E-6 | 1091 | 1194 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
| Gene3D | G3DSA:3.40.50.300 | 1.1E-6 | 1142 | 1193 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| SuperFamily | SSF52058 | 6.8E-31 | 1215 | 1441 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 2.1E-23 | 1217 | 1443 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Pfam | PF07725 | 1.4E-8 | 1278 | 1297 | IPR011713 | Leucine-rich repeat 3 |
| PRINTS | PR00364 | 4.5E-19 | 1367 | 1383 | No hit | No description |
| PROSITE profile | PS51319 | 19.325 | 1517 | 1594 | IPR017923 | Transcription factor IIS, N-terminal |
| SuperFamily | SSF47676 | 1.57E-17 | 1519 | 1604 | IPR017923 | Transcription factor IIS, N-terminal |
| CDD | cd00183 | 3.34E-14 | 1520 | 1591 | No hit | No description |
| Gene3D | G3DSA:1.20.930.10 | 3.6E-21 | 1520 | 1591 | IPR017923 | Transcription factor IIS, N-terminal |
| SMART | SM00509 | 4.6E-8 | 1522 | 1593 | IPR003617 | Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type |
| Pfam | PF08711 | 2.6E-11 | 1542 | 1591 | IPR017923 | Transcription factor IIS, N-terminal |
| PROSITE profile | PS50103 | 11.732 | 1651 | 1679 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF07928 | 1.3E-42 | 2899 | 3029 | IPR012501 | Vps54-likeVacuolar protein sorting-associated protein 54, C-terminal |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006351 | Biological Process | transcription, DNA-templated | ||||
| GO:0007165 | Biological Process | signal transduction | ||||
| GO:0042147 | Biological Process | retrograde transport, endosome to Golgi | ||||
| GO:0000139 | Cellular Component | Golgi membrane | ||||
| GO:0000938 | Cellular Component | GARP complex | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| GO:0043531 | Molecular Function | ADP binding | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 3160 aa Download sequence Send to blast |
MIGDLMKNNN DDVVDKNEGS NNNLLRQRHN NSSGIIKVSR ASSGKDRHSK VFTSKGPRDR 60 RVRLSGSTAL QFCDLQNRLG YDQPNKAVEW LIKAAKDSIS QLPSSLNITN FPITDDKNQS 120 QTLAGASSGT ATANSLSKSD IDSSRIIIIS RASGGEDRHG KVFTSKGLRD RRARLSLSTA 180 IQFYDLQDRL GYDRPSKAVE WLIKAAEDSI SELPSLNNTN FPMTDDENQN QTLTGASAAA 240 ATASSLSKSA CSSKSDTSKN SSGLSLSRSE RRDKASEGTV KETKERDGNS HHTTLPSFTH 300 QLVSGSGSIS SNLQWMAPSS SPSPMEYFGS GLILGLGQTH FPIQTNAHPF SSMSDHHQEF 360 SFVPDHLISP AGSKGGGALN LDFNISTTCA GVSGFNRGTL QSYSANDDRH HQSFLASLKE 420 AFCEFLRHRN PLRSFSESTV DDAIEFFRTL PSDRCNKAIS HLSKATFNET DGDHEENPFG 480 NPVVRTFLQE RVKELAHEKE YGDKKLNPEG RRPEITGRYR DDDKENLFQK YLTTSDLSNL 540 DSLVVAVDED SGKYVRSATA TATATVDGDT ERILQVEDEE GKLWQFGFSY LNVSQRYELT 600 KGWSNYIKEK QLGAGDFVFF QRHCTDSSRL FIGFKRREAA LGQWDYLRCH DLSSLATSSE 660 ALEVTPKKVE AALGLSTSSE TLELTEKPKE VETPVQLTIP EYSITGSDPI LVFYCGDNQD 720 AEERYFISYI SNELCLCGFT PLIFDLTRST VTGNLEMLHG SQIGIIIFSN NYSFSRQCLD 780 EFVAILDHWK ANNLVLLPVF FKVNVAYIRR QSGSFGDAFS RLENSVHTLI SINKYEYMKG 840 DDVIIVKSIV RDVCLLLNSE ANMNLRRSLQ MKSILTILNC SQFSGPHIVG LWGMVGIGKT 900 TIAREIFRIQ AERYDVCYYL PDFYKVCQTR GLSHLRDEFF SKISGEEKVI IDACDTKLSF 960 TRDRFLCKKV LIVLDGVIDA RDAEVLVGGF GWFSGRHTII LTSRNRQVLV QCNAKDIYEI 1020 QKLSKPESLR LFCQFATEQT LKGRTWLISE LLNYASGNPL ALRVLGSSLQ KQCINDEKLH 1080 LRSLRQHPPI EIRDAFGISF NKLDDNEKTI FLDLACFFRG ENKDRVVNIL DGCGFLTDLG 1140 IYGLIDESLI SLVDNRIEMP NIFQDTGRFI VCQENNDTCK RSRLWDPNDI VDVLTNNSGT 1200 EAIEGLFLDA SGLTFDLSPN AFEKMYRLRL LKLYYQTSKN HCKVCLPEGL YSLPDELRLL 1260 HWERYPLGSL PRNFNPKNLV ELNMPYSSLT KLWKGTKNLE KLKRIILSHS RELTKFPRLS 1320 KARNLEHIDF EGCTSLIKVN SSILYHHKLT FLSLKDCSHL RIMPTTVHLE ALEVLNLSGC 1380 SELEDIQDFS PNLKELYLAG TAIRKLPSSI GGLSRLVTLD LENCDRLLHL PPEISKLKVV 1440 VTLSGKRPVS SLDLSSVEDT APPYKRWRLK KVIETVILSL RKRKHENSVS RFNGRVHEET 1500 KEEKKVKEKL VDGDNDDRLK SILNIQKKLE DPDLSEEALI ELLQNLGYVD ITLGLLQDCD 1560 IGRRVNRLRE HRSKNVQRLA KQLIKKWKDI VAESMRLNQP GDPKPPSLVC KGKESNSESR 1620 KKHHPSQFHH PKDRETSVPV GSLNLPGLPL RPGKPVCALY FHTGNCSSGP TCIFDHPSLF 1680 PTHKNTSLVF SGTPHLNQLG FSSSIGDSSS ELVEASSKKP RIHKNASSMA SETRRLSPLG 1740 SFYSIGDSSS ELVEASTMSE ITEATVDKDT FYSSDLLSSE IVEASLLSEI TQVSGTDTIG 1800 LWDVNEEDTV FVASTFKPSS LFSSNTPEES PTVEKDHMFL FGYVIMNPVE GSDHDVQADL 1860 VSFEFHPVNA ENQLLDDRCT VKRCGVHLVT ALLEQLVIPH LVQNVQLLAW IQFILVKFDY 1920 INFEKNEGKE FGSHKFLRIK TAPSQSYSSL TDSLAAIHKS TQSAAWVYQV SRARSLEKKR 1980 TKEFGYSDRS IPRRSYSAES MKQRRSYSDD SIHDAAIGIQ TNFREYKCRK QHLITRQEIV 2040 LIQMTWIVNP PSNESSAVKT PHWSPPPPLE PSHRRLRPRE EGFLNQTLHD FDFVSDLMDS 2100 HPSLMGRSIG NSNRSSLDLG RSSSSSSSSS PSSLTKSISD ASSQSLSSIL NNPHGGKSGV 2160 YGSDASWVGW WSSSTFVAPS EFAPVASTKL PGSELTRSDF HGYVSSISES HGRFEDIRNH 2220 TKEESSGFDQ ESHVSGLAAC LREVPSLYFK EDFALEDGAT FRSACPFSSL TENLALQEKL 2280 SQYLDVVELH LVKEISVRSD SFFEAQGQLQ DLNVKIVEGC SRIRELKETI RLLDRNLVDS 2340 ARQIQELSST RINMLELQRK LRLILYVNQA LTALKLLVAS ADCAGALDIT DDLQNLLTGD 2400 ELTGLHCFRH LRDHVTTSIE SINRISPLRG RHFYRLMIMN APSILTAEFM RISIHNTGEI 2460 DVLILSAAKK RGSISSNGET GDEVKLEEDT TTLCDRLLPL VIGLLRTAKF PSILRMYREA 2520 LTSEMKNAIK NAVAELLPIL VTRSLESDFS HGERSVDVDE SMLIPSAYTG GGLSLASKLR 2580 TLSSEAFVNL LTAIFRIVQA HLVRASEVKK AIEWILCNID GHYAADSVAA AIAVGAVAAE 2640 SAQETGFQGG PLVSSPLGKA TSKAPPLQRK SSDTSSLMNL SRNFRADVLR ENTEAIFAAC 2700 EVTHARWAKL LGVRALLHPK LKLQEFMSIY DLTQEFITAT EKIGGRLGSS IRGTLQSQAK 2760 AFVDSQHEAR MTKLKAVLDQ ETWDEIDVPE EFQSIIGSLF ASKELISGKV DDADIRTHHK 2820 NPLPLNGSLT SGSGDQTTEL RNEKSESSED PAVGNAQVKS TVSPEFLERS KAGVSPVTNS 2880 QSNQKAHGKS NLFYQGVGYH MVNCGLILLK MLSEYIDMNN SLPALSSEIV LRVIEVLRFF 2940 NTRTCQLVLG AGAMQVSGLK SIKAKHLALA SQVIDFTYTI IPESRRILFS KVPETRKPLL 3000 SGEIDKVAQD YRVHRDEIYT KLVQIMRERL LAHLHGLPKV VEGWNRPPDT NKQTKEFAWP 3060 LTREVGYLHR VLSETLHEAD VQAIFRQVIL IIHTQTSQTL ANLEISSPEA KKRLKLHVEL 3120 ILKCIRSLPS DNANQSEIPN WGQLDEFFAQ NFREEGGEAE |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5zkt_A | 1e-20 | 49 | 214 | 1 | 55 | Putative transcription factor PCF6 |
| 5zkt_B | 1e-20 | 49 | 214 | 1 | 55 | Putative transcription factor PCF6 |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 1879 | 1883 | TVKRC |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | 676792470 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM9197 | 2 | 2 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G12020.1 | 1e-137 | WRKY family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|