PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676755586
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Trihelix
Protein Properties Length: 298aa    MW: 35286.5 Da    PI: 6.9649
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676755586genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.65.3e-2643125186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W+ +e+++Li++r e+++++ ++k++k lWe +s+kmr++ f rsp+qCk+kw+nl +r+k ++++e++    +++++p++d+++
  676755586  43 QWSVEETKELIAIRGELDQAFMETKRNKLLWEVISNKMRDKSFLRSPEQCKCKWKNLVTRFKGCETMEEET---ARQQFPFYDDMH 125
                7********************************************************************84...56679*****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.4E-440102IPR001005SANT/Myb domain
CDDcd122035.29E-2242107No hitNo description
PfamPF138371.8E-2043125No hitNo description
PROSITE profilePS500907.71244100IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDGHQQHQLH QLQYLNKTHH GQLRPQTQTP EIASAAAGDR FPQWSVEETK ELIAIRGELD  60
QAFMETKRNK LLWEVISNKM RDKSFLRSPE QCKCKWKNLV TRFKGCETME EETARQQFPF  120
YDDMHIIFTS RMQRILWAES EGGGGGGGTS GTTRKRSHSE QFSSDEEEEN VNEELLDISN  180
EQKILNPKKN IVKKRKGGIT SSSGANNSVR EVLDEFMRHQ MGMENEWRER WEAREKERAE  240
KEDEWRRKME ELERERVAME RMWRDREEQR RSREEMRAEK RDSLINALLA KLTRDGSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A5e-1340121384DNA binding protein GT-1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186195PKKNIVKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676755586
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013752201.11e-158trihelix transcription factor GT-3b-like
SwissprotO804501e-118TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A3P5YQJ61e-157A0A3P5YQJ6_BRACM; Uncharacterized protein
STRINGBo4g029680.11e-157(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.11e-102Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]