PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676751244
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family AP2
Protein Properties Length: 440aa    MW: 49712 Da    PI: 7.7623
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676751244genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.23.6e-12249305155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a+ k++g
  676751244 249 SRYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDDEEKAARAYDLAAMKYWG 305
                79*******************87776664447766.557777**************98 PP
2AP2483e-15348399155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  676751244 348 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 399
                78****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-14249314IPR016177DNA-binding domain
PfamPF008471.1E-8249305IPR001471AP2/ERF domain
CDDcd000185.57E-18249312No hitNo description
SMARTSM003806.6E-21250319IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-12250314IPR001471AP2/ERF domain
PROSITE profilePS5103217.095250313IPR001471AP2/ERF domain
PRINTSPR003672.0E-6251262IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18348409IPR016177DNA-binding domain
PfamPF008475.4E-10348399IPR001471AP2/ERF domain
CDDcd000182.71E-25348409No hitNo description
SMARTSM003801.3E-33349413IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-18349407IPR001471AP2/ERF domain
PROSITE profilePS5103219.045349407IPR001471AP2/ERF domain
PRINTSPR003672.0E-6389409IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MNKWMGFSLT PHLRISGRDQ EEDEENYVFT DQQKALMPLN SDGSLVFTDS LTHHPPPAWR  60
CDINLDHHHH HRHDEEVPKL EDFFSNFHQT ECSINGHNET NVNCTTMVNR LSPPGYLLHE  120
QTVVKQQYLN LNPNLCNDYG GSASGFKSWS RQGPPTFSVS NAYVTGEGST SSTSNFSHEE  180
TDYNNSGSTL LLAMSHTAAS DLINELNVSI PVEEPVKVEE KRKSLIGKSH VKEPVPPTKS  240
VDSLGQRTSR YRGVTRHRWT GRYEAHLWDN SCKKEGQTRK GRQGGYDDEE KAARAYDLAA  300
MKYWGPTTHL NFSSSNYEKE IEDLKNMTRQ EFVAMLRRKS SGFSRGASVY RGVTRHHQHG  360
RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGV NAVTNFDISR YDVKRLCSNS  420
TIINSVQHAK RSPTSPSAGQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676751244
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127942.20.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE10.0AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A398AAY10.0A0A398AAY1_BRACM; Uncharacterized protein
TrEMBLM4CUZ50.0M4CUZ5_BRARP; Uncharacterized protein
STRINGBra008040.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117472532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.10.0AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]