PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676744398

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

TCP

Protein Properties

Length: 266aa MW: 29719.9 Da PI: 7.3443

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676744398	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	93.2	5.2e-29	42	120	3	66
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............s 66 g+kdrhsk++T +g+RdRR+Rlsa +a++++dLqd+LG+ ++sk i+WLl++a+ ++ l+ + + 676744398 42 GGKDRHSKVCTVRGLRDRRIRLSAMTAIQLYDLQDRLGLSQPSKVIDWLLEAAQNDVDSLPPLqfppgfhpsltagagE 120 68*************************************************************4444444444433330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.496	43	101	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.0E-26	43	105	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MTDTRRTNSI GIKQEGDNHY QASSLSSMRQ NPRIVRVSRI FGGKDRHSKV CTVRGLRDRR 60 IRLSAMTAIQ LYDLQDRLGL SQPSKVIDWL LEAAQNDVDS LPPLQFPPGF HPSLTAGAGE 120 SFPKGILESF DLGSCSSRTD AIPRECLDLE KRKWVKPNES SNLEHGFDID HHFFSNSSQS 180 DKLYFPTSST YNNSSNSYHY NLGHLQHSLL DQSGNVTVAF SNNNLNPPVA ESVSSLFPRY 240 PSFLDGGQLQ LFSSNSNSSK QTDHVE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-17	48	102	1	55	Putative transcription factor PCF6
5zkt_B	2e-17	48	102	1	55	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00497	DAP	Transfer from AT5G08070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676744398

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC241004	1e-131	AC241004.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026J02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013680480.1	1e-138	transcription factor TCP17-like
Swissprot	Q9LEZ9	1e-107	TCP17_ARATH; Transcription factor TCP17
TrEMBL	A0A291I340	1e-136	A0A291I340_BRARR; TCP17a
TrEMBL	A0A397ZZ28	1e-136	A0A397ZZ28_BRACM; Uncharacterized protein
STRING	Bo3g004670.1	1e-135	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3576	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08070.1	6e-98	TCP domain protein 17

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]