PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676740086
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family TCP
Protein Properties Length: 344aa    MW: 38034.8 Da    PI: 7.5788
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676740086genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.73e-36271382105
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaesssssasnsssg.... 88 
                +gkkdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++ak +i++l+++                   ++ s+++ + s++    
  676740086  27 TGKKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLIKKAKSSIDDLAQLppwnpadtlR---------QAASNAKPKRSKTlpat 117
                79**************************************************************5433333320.........22222222222224444 PP

        TCP  89 ....kaaksaakskksqksaa 105
                    ++ + +++++++q+s+ 
  676740086 118 gtehHHHQHHHHHQQQQHSSY 138
                443222222223333333332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-3327137IPR005333Transcription factor, TCP
PROSITE profilePS5136933.6522987IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MADKESNNGG GCGEIVEVEG GHIVRSTGKK DRHSKVCTAK GPRDRRVRLS APTAIQFYDV  60
QDRLGFDRPS KAVDWLIKKA KSSIDDLAQL PPWNPADTLR QAASNAKPKR SKTLPATGTE  120
HHHHQHHHHH QQQQHSSYLP ASMDSDSIAD TIKSFFPVVS TETTPPQHQP RGNTQSQDLR  180
LSLQSTEHAL FSGQHALFDE STAATSWEQS QEVGRMQRLV TWNNVGAGDS GGFVFASPAT  240
TTTTFQAGYG QQSQVFSQRG PLQSINTPMI RAWFDPHHHQ SISTDDDLHL HHHHNHVPTV  300
VHQSAIPGIA FASSGEFSGF RSIPARFHGE HDHHGDKPLS DSRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-203487154Putative transcription factor PCF6
5zkt_B4e-203487154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00203DAPTransfer from AT1G53230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676740086
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392814.11e-151transcription factor TCP3
RefseqXP_006392815.11e-151transcription factor TCP3
SwissprotQ9MAH81e-143TCP3_ARATH; Transcription factor TCP3
TrEMBLV4JXC21e-150V4JXC2_EUTSA; Uncharacterized protein
STRINGXP_006392814.11e-151(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24082771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.11e-122TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
Publications ? help Back to Top
  1. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  3. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]