PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676738184 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | NF-X1 | ||||||||
Protein Properties | Length: 1154aa MW: 129502 Da PI: 8.3448 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 21.2 | 6.3e-07 | 509 | 528 | 1 | 20 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 C +HkC ++CH G+CppC++ 676738184 509 CNIHKCREICHDGDCPPCRE 528 449***************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF09439 | 4.0E-9 | 57 | 164 | IPR019009 | Signal recognition particle receptor, beta subunit |
CDD | cd04105 | 2.09E-48 | 59 | 272 | No hit | No description |
SuperFamily | SSF52540 | 8.05E-14 | 71 | 144 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Gene3D | G3DSA:3.40.50.300 | 7.0E-11 | 76 | 160 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SuperFamily | SSF52540 | 8.05E-14 | 172 | 271 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Gene3D | G3DSA:3.40.50.300 | 2.0E-14 | 178 | 271 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF09439 | 2.8E-12 | 179 | 259 | IPR019009 | Signal recognition particle receptor, beta subunit |
PROSITE pattern | PS01359 | 0 | 346 | 410 | IPR019786 | Zinc finger, PHD-type, conserved site |
CDD | cd06008 | 1.02E-6 | 445 | 493 | No hit | No description |
SMART | SM00438 | 8.1 | 457 | 475 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 3.4 | 457 | 474 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.99E-11 | 499 | 547 | No hit | No description |
SMART | SM00438 | 9.3E-5 | 509 | 528 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 1.4E-4 | 509 | 527 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.49E-8 | 552 | 592 | No hit | No description |
SMART | SM00438 | 0.038 | 562 | 581 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.063 | 562 | 580 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 4.80E-8 | 606 | 649 | No hit | No description |
SMART | SM00438 | 0.073 | 616 | 636 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0031 | 616 | 635 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 54 | 736 | 757 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 4.6 | 746 | 756 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 200 | 765 | 810 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 100 | 765 | 774 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 9.4 | 847 | 878 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.24 | 847 | 858 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.82E-4 | 876 | 917 | No hit | No description |
SMART | SM00438 | 0.33 | 888 | 906 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 9.9 | 889 | 905 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 15 | 951 | 972 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 11 | 953 | 965 | IPR000967 | Zinc finger, NF-X1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000037 | Biological Process | regulation of stomatal complex patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1154 aa Download sequence Send to blast |
MENLEDLKIM AEQWSNQGIE YLQKIPPPQL YAAVGLLLLT TILLLSISTV EEVNVSQATI 60 LDLGLMQSII SSLVLRDGSS HQGTVTSMEP NEGTFVLHTE NAKKGKIKPV HLVDVPGHSR 120 LRPKLEEFLP QAAAIVFVVD ALEFLPNCRA ASEYFFQTLS LSITHARDMF TSRKHKRNKY 180 LYDILTNANV VKKKIPVLLC CNKTDKLTAH TKEFIRKQME KEIEKLRSSR NAVSTADIAN 240 DFTIGIEGEV FSFSHCCNKV TVAEASGLNG ETVQPHPHPP PQQQIISDSD SDSGSDSDNH 300 QHRHNDVSNS IFKAYLDCHS SSSPSSIDLA KIQSFLASSS SGAVSCLICL ERIKRTDPTW 360 SCTSSCFAVF HLFCIQSWAR QCLELQSARA VTRPSSTPNE PEALWNCPKC RSSYQKSEIP 420 RRYLCYCGKE EDPPADNPWI LPHSCGEVCE RPLSNKCGHC CLLLCHPGPC ASCPKLVKAK 480 CFCGGVEDVR RCGHKLFSCG NVCDLVLDCN IHKCREICHD GDCPPCRERA VYRCCCGKVK 540 EEKDCCERLF RCEASCENKL NCGKHVCERG CHSGECGLCP YQGKRSCPCG KKFYQGLSCD 600 VAAPLCGGTC DKVLACGYHR CPERCHRGQC LETCRIVVNK SCRCGGMKKQ SRFLAIKSWC 660 VRGNAREREI VRAIHVDAVV VMVNVHHAQR GQCAPCPIMV SISCSCGETH FEVPCGTETN 720 QKPPRCRKLC HVTPLCRHGQ NQKPHKCHYG PCPPCRLPCD EEYPCGHKCK LRCHGPRPPP 780 NREFMIKPTK KMLNIHAEST PGSPCPRCPE LVWRPCVGHH LAAERMMVCS DKTQFACDNL 840 CGNPLPCGNH YCTFTCHPLD IRSSSLDKRS ESCEKCEVRC QKERTPRCQH ACPRRCHPED 900 CPPCKTLVKR SCHCGAMVHA FECIYYNTLS EKDQTKARSC RGPCHRKLPN CTHLCPEICH 960 PGQCPSPEKC GKKISVQFIF IRDVVTFTSW ILLASDIFSW IKVVVRCKCL TLKKEWLCKD 1020 VQAAHRVTGA DLKDVSKNQF GVGLLPCDSK CKSKLQMAES VLQQRNVKEI EEKEEPSGKN 1080 ATKRRKRRER GQDIKETSRL QKLAVATKKV AMLVMLIAVI VAVSYYGYKG ILWLSDWMNE 1140 VEEQRQKSRR YPRI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6frk_v | 4e-15 | 56 | 270 | 5 | 193 | SRP receptor beta subunit |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676738184 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352948 | 0.0 | AK352948.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-B22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010423446.1 | 0.0 | PREDICTED: NF-X1-type zinc finger protein NFXL2-like | ||||
Swissprot | Q9FFK8 | 0.0 | NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2 | ||||
TrEMBL | V4N4Z0 | 0.0 | V4N4Z0_EUTSA; Uncharacterized protein | ||||
STRING | XP_010423446.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10954 | 27 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05660.1 | 0.0 | sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors |