PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676736916 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | Trihelix | ||||||||
Protein Properties | Length: 312aa MW: 35320.9 Da PI: 9.8021 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 75.5 | 8.5e-24 | 69 | 148 | 2 | 85 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 Wt++e+l+Lie ++e++++++rg lk ++Wee++ ++ ++ g+ers++qC++k+e+l+kr+++++++++ s +p+++q+ 676736916 69 WTQDETLLLIESYKEKWHAIGRGPLKSNHWEEIAVAVsARSGVERSATQCRHKIEKLRKRFRAERQSMGPI-----SIWPFYSQM 148 ***********************************998899****************************84.....68*****99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.004 | 65 | 128 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.748 | 69 | 126 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 8.6E-20 | 69 | 150 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MATPSPTSSP PSDSNPNSAA TPPQQNQPPS TSTTITTTTI QTQPPPPTTV VALAASTSAV 60 ARKTQPVLWT QDETLLLIES YKEKWHAIGR GPLKSNHWEE IAVAVSARSG VERSATQCRH 120 KIEKLRKRFR AERQSMGPIS IWPFYSQMVE LDSNPAPISA RPLTRLPPHH CQEDQEEEEE 180 EEEEEEDYEE EDERQNKNKS RSINHILRRP GTVNRFAGVG GGLLQWGQKE RSKRKRKEDG 240 GGEMIRRKKG ARAVASEIRA FAERVMVMEK KKIEFAKETV KLRKEMEIKR LKLIQSSQAQ 300 LLQFLNTAFD SF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 234 | 248 | KRKEDGGGEMIRRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676736916 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018486618.1 | 1e-151 | PREDICTED: trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A1J3CS39 | 1e-154 | A0A1J3CS39_NOCCA; Trihelix transcription factor ASIL2 (Fragment) | ||||
TrEMBL | A0A1J3IPX0 | 1e-154 | A0A1J3IPX0_NOCCA; Trihelix transcription factor ASIL2 (Fragment) | ||||
STRING | A0A087HCF3 | 1e-153 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10281 | 22 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24860.1 | 1e-133 | Trihelix family protein |