PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676734554
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family TCP
Protein Properties Length: 352aa    MW: 37123.9 Da    PI: 9.7417
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676734554genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.33.3e-3574151274
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....e 74 
                + k+ +++++hTkv+gR+RR+R++a+ aar+F+L++eLG+++d++ti WLl++a+pai+++tgt++ +a ++      
  676734554  74 PLKRASTKDRHTKVEGRGRRIRMPATSAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMsvngtL 151
                57999***********************************************************77777444211110 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.0E-2979157IPR005333Transcription factor, TCP
PROSITE profilePS5136926.33580134IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MATVNKHETG GKDEQRITAV DLSIINGVRS VETSKPFEVR LDLEPKEEPS LESSSQQVPS  60
ISMSLAPPSS MGPPLKRAST KDRHTKVEGR GRRIRMPATS AARIFQLTRE LGHKSDGETI  120
RWLLENAEPA IIAATGTGTV PAIAMSVNGT LKIPTTTNAD SDLGDNPAKK RRKRPSNSEY  180
IDINEAVSVS SGLAPISTAT IQPPSSTSTV AAQQALPQGM IPMWAVPSNA VIPTVGAFFF  240
VPHVAAPSNQ PQMLAFPAAA AAGSPSSYVA AVQQASLMAR PPPPPHPQVV PDVTGSKPST  300
TSSVMAPSSS SGITNGGSSS TANMLRDFSL EIYEKQELHQ FMTTTTARSS NH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168172KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00316DAPTransfer from AT2G45680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676734554
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397747.10.0transcription factor TCP9
SwissprotO646471e-162TCP9_ARATH; Transcription factor TCP9
TrEMBLV4KMR60.0V4KMR6_EUTSA; Uncharacterized protein
STRINGXP_006397747.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98312434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-141TCP family protein