PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676723276 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | NF-X1 | ||||||||
Protein Properties | Length: 1932aa MW: 213101 Da PI: 6.4496 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 17.8 | 7.4e-06 | 1109 | 1127 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H C+k+CH GpC+pC+ 676723276 1109 CGRHHCEKTCHVGPCDPCQ 1127 ******************6 PP | |||||||
2 | zf-NF-X1 | 16.9 | 1.4e-05 | 1173 | 1190 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C+ CH+GpC+ C 676723276 1173 CGNHFCSDVCHPGPCGDC 1190 ****************99 PP | |||||||
3 | zf-NF-X1 | 21.7 | 4.3e-07 | 1232 | 1249 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+C++ CH G CppC 676723276 1232 CGLHTCNEVCHSGVCPPC 1249 ****************** PP | |||||||
4 | zf-NF-X1 | 17.8 | 7.4e-06 | 1330 | 1348 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C++lCH G CppC 676723276 1330 CGQHSCESLCHSGHCPPCL 1348 ******************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF74788 | 7.85E-35 | 131 | 351 | IPR016159 | Cullin repeat-like-containing domain |
SuperFamily | SSF57850 | 1.77E-6 | 930 | 1000 | No hit | No description |
PROSITE profile | PS50016 | 8.929 | 938 | 999 | IPR019787 | Zinc finger, PHD-finger |
PROSITE profile | PS50089 | 9.583 | 941 | 997 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS01359 | 0 | 941 | 996 | IPR019786 | Zinc finger, PHD-type, conserved site |
CDD | cd06008 | 8.09E-8 | 1030 | 1092 | No hit | No description |
SMART | SM00438 | 0.023 | 1054 | 1072 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 15 | 1056 | 1071 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.01E-15 | 1099 | 1147 | No hit | No description |
Pfam | PF01422 | 2.4E-4 | 1109 | 1126 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 2.6E-4 | 1109 | 1128 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.58E-11 | 1163 | 1208 | No hit | No description |
Pfam | PF01422 | 1.5E-4 | 1173 | 1190 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 6.1E-5 | 1173 | 1192 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 5.63E-16 | 1222 | 1269 | No hit | No description |
Pfam | PF01422 | 3.5E-5 | 1232 | 1249 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 1.8E-5 | 1232 | 1251 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 5.28E-6 | 1281 | 1341 | No hit | No description |
Pfam | PF01422 | 33 | 1291 | 1302 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 92 | 1291 | 1322 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 6.59E-13 | 1320 | 1372 | No hit | No description |
Pfam | PF01422 | 1.8E-4 | 1330 | 1347 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 2.0E-4 | 1330 | 1349 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.16E-8 | 1377 | 1424 | No hit | No description |
Pfam | PF01422 | 33 | 1387 | 1404 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.079 | 1387 | 1405 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.18E-4 | 1430 | 1485 | No hit | No description |
Pfam | PF01422 | 0.013 | 1440 | 1455 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0046 | 1440 | 1470 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.92E-6 | 1468 | 1517 | No hit | No description |
SMART | SM00438 | 5.4 | 1479 | 1500 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01424 | 2.7E-4 | 1611 | 1675 | IPR001374 | R3H domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009642 | Biological Process | response to light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009697 | Biological Process | salicylic acid biosynthetic process | ||||
GO:0010188 | Biological Process | response to microbial phytotoxin | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1932 aa Download sequence Send to blast |
MESSEEDDDF PCIESITPQS KIDSVHQSLT EKGIRKLCCE LLDLKDAVEN MCGDMRTKYL 60 AFLRISEEAV EMEHELVELR KHISSQGILV QDLMAGLARE MDEWKRSAGD ADDSDNSEVS 120 DTFPNESADP QSEFLEKIDL LLAEHKVDEV LGAMDAEERN NPELKGSVEI SSYKSAFMER 180 KAVLEDQLLR IAKQPSISVA ELKHALNGLI KLGKGPSAHQ LLLKFYATSL HRRIEAFLPS 240 CSSCPNTFPA TLSKLVFSNI SVAAKESAAM FGDDDNPAYS NKVVQWAERE VEYLVRLVKE 300 NAAPSETVSA LRAASVCLQD CLNYCKVLEP QGLLLSKLFL VLFRPYVEEV LELNFRRARK 360 VIFDLTETDE GLESSSEFVA LLSEFAIASD TTMTDCSIRF MQIVQDILEQ LTHLVVLHFG 420 ESVLTRILQL YDKYIDFLIK ALPGHADEDG LPELQDHTIL ARAETDSEQL ALLGAAFTIL 480 DELLPKSLIK VWNLQIENGG GDGDSSASLI SSSAPELKEW KRHMVQAFDK LRNYFCLQFV 540 LSFIYSREGL TRLDALIYLT ETPDDSHLPS LPFQALFSKL QQLAIIAGDV LLGKEKLQKI 600 LLARLTETVI IWLSNEQEFW SAFEDESTPL QPFGLQQLIL DMNFTVEIAR FAGYPFKVVQ 660 NHASVVINRA ISIFSARGIN PQSSLPKAEW FTEAAKSAIN RLLMGSDEAS EPEEYDCEED 720 EGHIVLPEID DDEHSDSEET SSLSTMDSFE SFASASMADL EKALCEPIAP TVTTGTGSGS 780 VFVESDKKMS SQVRRDRPRY NHHNSQQTWV PRGSSTSVPP VNEPSLPPPP TNTDTSSEGL 840 DSRASSRPVY LQRHQNGSAR PAYNHHQRSN VAAPPPPNRQ RRNNYAPGTL TDNRQRVASR 900 TRPVYQGKRV AKEDNVVSTD PNLPQLVQEL QEKLVKSSVE CMICYDKVGR SANVWSCSSC 960 YSIFHMHCIK KWARAPTSID LLAEKNQGDN WRCPGCQSVQ LTSSREICYR CFCGKRKDPP 1020 SDPYLTPHSC GEPCGKPLEK EFAASAETSK EDLCPHVCVL QCHPGPCPPC KAFAPPRSCP 1080 CGKKMIHTRC SERRSLLVCG QRCEKLLNCG RHHCEKTCHV GPCDPCQVLV NATCFCKKKV 1140 ETVICGDMNV KGELKAEDGV YSCNLNCGKP LGCGNHFCSD VCHPGPCGDC DLMPSRVKTC 1200 YCGKTRLEEQ TRQSCLDPIP SCSSICKKLL PCGLHTCNEV CHSGVCPPCF VQVNQKCRCG 1260 STSRTVECYI TTSSESEKFV CSKPCGRKKN CGRHRCSERC CPLLNAKKND LSGGWDPHVC 1320 QLPCGKKLRC GQHSCESLCH SGHCPPCLEM IFTDLTCACG RTSIPPPLPC GTPVPSCQLP 1380 CSIPQPCGHS ATHGCHFGDC PPCSAPVEKK CVGGHVVLRN IPCGLKDIRC NKICGKTRRC 1440 GMHACARTCH PEPCDSYDES KAGVRVTCGQ TCGAPRRDCR HTCAECCHPS QPCPDSRCEF 1500 PVTITCSCGR ITAKVPCDAG GNACNLRVDS VYEASVLQKL PTTLQPVESS GNRIPLGQRK 1560 LSCDDECAKL ERKRVLQDAF DITPPNLDSL HFSENSAMTE IISDIYRRDP KWVLAVEERF 1620 KFLVLGKARG STSALKVHVF CPMQKDKRDT VRLLAERWKL AVSNAGWEPK RFTVVHVTQK 1680 SKPPTRIIGA RAGAVSVSGP HAPSFDPLVD MDPRLVVSLL DLPREANISA LVLRFGGECE 1740 LVWLNDKNAL AVFHDHARAA TAMRRLDHGS VYHGAVVVQN GAQSSSLGNA WGKLPASSSW 1800 DVQKANPWKK PVIQECDDTW GAEDSPIAGS STDIIQPSAW NSATSNTPVV TSVNRWSVLE 1860 PEKTKTSAVE PLVQTEEGSS SKAAGKQPVE GSGEEVVDDW EKRLYACTTP VMSLGLCPLQ 1920 SLGDSQRRAV LF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676723276 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189519 | 0.0 | AC189519.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091G04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013640936.1 | 0.0 | NF-X1-type zinc finger protein NFXL1-like | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | M4DTW5 | 0.0 | M4DTW5_BRARP; Uncharacterized protein | ||||
STRING | Bra019958.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5955 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |