PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676716680
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family TCP
Protein Properties Length: 455aa    MW: 52026.4 Da    PI: 8.3982
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676716680genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.72.4e-391523372135
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssasec....e 74 
                + ++drhski T++g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i++++++                       s++++s+     +
  676716680 152 PSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIANSlsnqfnhggfssgeesqtrpalgSTDTSSDLcelaS 251
                5799************************************************************999999999988888877777775555544434442 PP

        TCP  75 aesssssasnsssg.............................kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                 ++ +  +s    +                                +s  k++++q ++    +l k+ rakar+ra++rt+ekm+++ +
  676716680 252 MWTVEDRGS----NtnkteknllivlqiikfidrfaletrgnkVDGRSMRKRSFAQPRTPILKKLTKDARAKARERAKDRTKEKMMKRRS 337
                222222222....13344678999***************998533334447888888888899**********************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-39153334IPR005333Transcription factor, TCP
PROSITE profilePS5136931.724154212IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.607314331IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MNDNKTLSTT STIINENYIL FPYNDHYSSQ PSLPFSPCSS INDDILIHSN SNTSNNHLDH  60
HQFLQAPSPF SQFEFVPDFA LLASFLPQNN GHNNNQTVTT NDHHHPPSLL PLNNPVGESQ  120
LTEPPVTMTT HIEDSQRIST SQDQKMKKVK KPSRTDRHSK IKTAKGTRDR RMRLSLDVAK  180
ELFGLQDMLG FDKASKTVEW LLTQAKPEII KIANSLSNQF NHGGFSSGEE SQTRPALGST  240
DTSSDLCELA SMWTVEDRGS NTNKTEKNLL IVLQIIKFID RFALETRGNK VDGRSMRKRS  300
FAQPRTPILK KLTKDARAKA RERAKDRTKE KMMKRRSQVN VVEEEAHNHH DEIVKNNKSN  360
MNWNSFEATP CEEIENLLCK RDRFALCNEF VVDKKDHVSG ESYEMINKLH SSFPMLDHHR  420
SQGAGSSIEQ QHQFTDLHHF LGKPRDLMYN YHSMC
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676716680
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013741083.10.0transcription factor TCP18 isoform X1
SwissprotA1YKT10.0TCP18_ARATH; Transcription factor TCP18
TrEMBLA0A3P6AA790.0A0A3P6AA79_BRACM; Uncharacterized protein
STRINGBra001710.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72692742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.10.0TCP family protein
Publications ? help Back to Top
  1. Lewis JM, et al.
    Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development.
    Plant Cell Rep., 2008. 27(7): p. 1217-25
    [PMID:18392625]
  2. Niwa M,Endo M,Araki T
    Florigen is involved in axillary bud development at multiple stages in Arabidopsis.
    Plant Signal Behav, 2013. 8(11): p. e27167
    [PMID:24305631]
  3. González-Grandío E,Cubas P
    Identification of gene functions associated to active and dormant buds in Arabidopsis.
    Plant Signal Behav, 2014. 9(2): p. e27994
    [PMID:24518068]
  4. Stes E, et al.
    Strigolactones as an auxiliary hormonal defence mechanism against leafy gall syndrome in Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(16): p. 5123-34
    [PMID:26136271]
  5. Yao C,Finlayson SA
    Abscisic Acid Is a General Negative Regulator of Arabidopsis Axillary Bud Growth.
    Plant Physiol., 2015. 169(1): p. 611-26
    [PMID:26149576]
  6. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  7. Seale M,Bennett T,Leyser O
    BRC1 expression regulates bud activation potential but is not necessary or sufficient for bud growth inhibition in Arabidopsis.
    Development, 2017. 144(9): p. 1661-1673
    [PMID:28289131]
  8. Otori K,Tamoi M,Tanabe N,Shigeoka S
    Enhancements in sucrose biosynthesis capacity affect shoot branching in Arabidopsis.
    Biosci. Biotechnol. Biochem., 2017. 81(8): p. 1470-1477
    [PMID:28471323]
  9. Lantzouni O,Klermund C,Schwechheimer C
    Largely additive effects of gibberellin and strigolactone on gene expression in Arabidopsis thaliana seedlings.
    Plant J., 2017. 92(5): p. 924-938
    [PMID:28977719]
  10. Yang Y, et al.
    The TIE1 transcriptional repressor controls shoot branching by directly repressing BRANCHED1 in Arabidopsis.
    PLoS Genet., 2018. 14(3): p. e1007296
    [PMID:29570704]