PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676716680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | TCP | ||||||||
Protein Properties | Length: 455aa MW: 52026.4 Da PI: 8.3982 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 126.7 | 2.4e-39 | 152 | 337 | 2 | 135 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssasec....e 74 + ++drhski T++g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i++++++ s++++s+ + 676716680 152 PSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIANSlsnqfnhggfssgeesqtrpalgSTDTSSDLcelaS 251 5799************************************************************999999999988888877777775555544434442 PP TCP 75 aesssssasnsssg.............................kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 ++ + +s + +s k++++q ++ +l k+ rakar+ra++rt+ekm+++ + 676716680 252 MWTVEDRGS----NtnkteknllivlqiikfidrfaletrgnkVDGRSMRKRSFAQPRTPILKKLTKDARAKARERAKDRTKEKMMKRRS 337 222222222....13344678999***************998533334447888888888899**********************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.6E-39 | 153 | 334 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.724 | 154 | 212 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.607 | 314 | 331 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MNDNKTLSTT STIINENYIL FPYNDHYSSQ PSLPFSPCSS INDDILIHSN SNTSNNHLDH 60 HQFLQAPSPF SQFEFVPDFA LLASFLPQNN GHNNNQTVTT NDHHHPPSLL PLNNPVGESQ 120 LTEPPVTMTT HIEDSQRIST SQDQKMKKVK KPSRTDRHSK IKTAKGTRDR RMRLSLDVAK 180 ELFGLQDMLG FDKASKTVEW LLTQAKPEII KIANSLSNQF NHGGFSSGEE SQTRPALGST 240 DTSSDLCELA SMWTVEDRGS NTNKTEKNLL IVLQIIKFID RFALETRGNK VDGRSMRKRS 300 FAQPRTPILK KLTKDARAKA RERAKDRTKE KMMKRRSQVN VVEEEAHNHH DEIVKNNKSN 360 MNWNSFEATP CEEIENLLCK RDRFALCNEF VVDKKDHVSG ESYEMINKLH SSFPMLDHHR 420 SQGAGSSIEQ QHQFTDLHHF LGKPRDLMYN YHSMC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676716680 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013741083.1 | 0.0 | transcription factor TCP18 isoform X1 | ||||
Swissprot | A1YKT1 | 0.0 | TCP18_ARATH; Transcription factor TCP18 | ||||
TrEMBL | A0A3P6AA79 | 0.0 | A0A3P6AA79_BRACM; Uncharacterized protein | ||||
STRING | Bra001710.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7269 | 27 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.1 | 0.0 | TCP family protein |