PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676709390

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

TCP

Protein Properties

Length: 397aa MW: 41909.8 Da PI: 6.5111

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676709390	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	133.5	2e-41	53	210	3	123
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............. 88 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ ++s +ss+s+ s++ 676709390 53 VTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFSsLSVSLRSSGSTLSAPtsksvplygalgl 152 679*****************************************************************99987888888888655557777889999999 PP TCP 89 ..........................kaaksaakskksqksaasalnlakesrakararar 123 ++ +++ +++q+++a+a ++ + ++ +r+r 676709390 153 shhphhhqyeeggafgahtppllgfhHHLQQQ---QQQQHHQAAAETMQGGTDGESFSRKR 210 98888889999999999888887653222222...22222222223333333333333322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.9E-42	57	221	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.411	58	112	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MDLSDAAAAA ARGSSRQLVD PSLSIVPRST PLEDTTTLTT TSSPSAATTS GVVTKRSTKD 60 RHTKVDGRGR RIRMPALCAA RVFQLTRELG HKSDGETIEW LLQQAEPAIV AATGTGTIPA 120 NFSSLSVSLR SSGSTLSAPT SKSVPLYGAL GLSHHPHHHQ YEEGGAFGAH TPPLLGFHHH 180 LQQQQQQQHH QAAAETMQGG TDGESFSRKR FRSVDLSKEN EDGKQNEKES ESSVAGTAAP 240 MWAVAPTNRS PGGNTFWMLP VPTTAGNQPP AMESSSNTNR AHMWPFGGGG GGGGAGAGAA 300 THFMAGTGFS FPMDQYRGSP LQLGSFLAQP QQQQPNQNLG LSMPDSNLGV LAALNAAYSR 360 GGNANAEQVN NAVEHQEKPQ QSDQDDDSRD ENSNSDE

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MDLSDAAAAA ARGSSRQLVD PSLSIVPRST PLEDTTTLTT TSSPSAATTS GVVTKRSTKD  60
RHTKVDGRGR RIRMPALCAA RVFQLTRELG HKSDGETIEW LLQQAEPAIV AATGTGTIPA  120
NFSSLSVSLR SSGSTLSAPT SKSVPLYGAL GLSHHPHHHQ YEEGGAFGAH TPPLLGFHHH  180
LQQQQQQQHH QAAAETMQGG TDGESFSRKR FRSVDLSKEN EDGKQNEKES ESSVAGTAAP  240
MWAVAPTNRS PGGNTFWMLP VPTTAGNQPP AMESSSNTNR AHMWPFGGGG GGGGAGAGAA  300
THFMAGTGFS FPMDQYRGSP LQLGSFLAQP QQQQPNQNLG LSMPDSNLGV LAALNAAYSR  360
GGNANAEQVN NAVEHQEKPQ QSDQDDDSRD ENSNSDE

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676709390

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009113333.1	0.0	PREDICTED: transcription factor TCP8
Swissprot	Q9C518	1e-174	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A1J3H9R6	0.0	A0A1J3H9R6_NOCCA; Transcription factor TCP8
STRING	Bra027886.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10218	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-137	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]