PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011098088.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family WRKY
Protein Properties Length: 316aa    MW: 35634.4 Da    PI: 7.9929
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011098088.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.99.8e-34187244259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s+fprsYYrCts++C+vkk++ers +dp++v++tYeg+Hnh+
  XP_011098088.1 187 EDGYRWRKYGQKAVKNSPFPRSYYRCTSQKCNVKKRIERSFQDPSTVITTYEGQHNHH 244
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-35171246IPR003657WRKY domain
SuperFamilySSF1182907.85E-29178246IPR003657WRKY domain
PROSITE profilePS5081131.984181246IPR003657WRKY domain
SMARTSM007742.4E-39186245IPR003657WRKY domain
PfamPF031066.8E-26187244IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MSDEDKINYS HPYDRDHRNV MGSEGFPFSF PTDLNFDPFT YSHHQLQNPT GLDHHHSQMS  60
FTSFLHGDAE YNTLSAAFDL SCLSSEAVHA VNNSSSNKNL LEAAGTTNSA SENPPATPNS  120
SVSFSSSEAV IEEDSSSKNR RDLQRKGCED GDVMKSTKLS KVKKKGEKKQ REPRVAFMTK  180
SDVDNLEDGY RWRKYGQKAV KNSPFPRSYY RCTSQKCNVK KRIERSFQDP STVITTYEGQ  240
HNHHSPATLR GSAAMLPPLP FPRLAQNFLF PNTCPQNHPN SSYYSHPNIS PEQPQILPDQ  300
SSLFPNMVSS FLHKHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-261792471078Probable WRKY transcription factor 4
2lex_A5e-261792471078Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011098088.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098088.10.0probable WRKY transcription factor 71 isoform X1
SwissprotQ8VWJ22e-53WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A2G9H2305e-98A0A2G9H230_9LAMI; Uncharacterized protein
STRINGVIT_12s0028g00270.t013e-83(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-50WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]