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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011094098.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | HB-PHD | ||||||||
Protein Properties | Length: 722aa MW: 82275.6 Da PI: 9.214 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.9 | 8.4e-09 | 481 | 525 | 9 | 53 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e L +F +n p ++ r L+k+lgL+ ++V WF+N R+ XP_011094098.1 481 HNAVEKLRLVFSENELPARALRVSLSKQLGLEFEKVNKWFKNARY 525 567899*************************************97 PP | |||||||
2 | PHD | 38 | 3.8e-13 | 216 | 270 | 2 | 51 |
BTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 2 CkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 C+ C+ + +++++lCd +C+ +fH+kCl+++l++e++p g w+C+ Ck+k XP_011094098.1 216 CAKCKLqeTLPDNDIILCDgTCNCAFHQKCLDPPLSTENIPPGdeGWFCKFCKKK 270 88888844445********56********************9999*******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 7.75E-15 | 208 | 273 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 2.4E-12 | 211 | 271 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.282 | 213 | 270 | IPR019787 | Zinc finger, PHD-finger |
CDD | cd15504 | 1.70E-30 | 215 | 267 | No hit | No description |
SMART | SM00249 | 3.4E-9 | 215 | 268 | IPR001965 | Zinc finger, PHD-type |
PROSITE pattern | PS01359 | 0 | 216 | 267 | IPR019786 | Zinc finger, PHD-type, conserved site |
Pfam | PF00628 | 3.7E-10 | 216 | 269 | IPR019787 | Zinc finger, PHD-finger |
Gene3D | G3DSA:1.10.10.60 | 2.9E-11 | 462 | 524 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.289 | 470 | 530 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-6 | 472 | 534 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.24E-8 | 473 | 534 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.91E-6 | 473 | 533 | No hit | No description |
Pfam | PF00046 | 3.6E-6 | 481 | 525 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 722 aa Download sequence Send to blast |
MPGAAKKEAR KKLLREDDER TLESMKRELK QPKKDPSSLS KRKVSNCLHE GNGNLRLKKK 60 IVKKAIACKT KTSKKQPSLS GLKDKLTAIS AKESEKTDDR DVNPRHLKRR RRRKKRKNNV 120 ELDEACRLQR RTRYLLIKMK LEQNLIDAYS AEGWKGQSRE KIKPEKELQR AKKQILKCKL 180 GIREAIRQLD LLSSEGRIND SVVAPDGAVH HEHIVCAKCK LQETLPDNDI ILCDGTCNCA 240 FHQKCLDPPL STENIPPGDE GWFCKFCKKK MEILEATNAH IGTHFPMDSN WQDVFKEEAV 300 LPDDGNSTLC PEEEWPSDDS EDDDYDPDRI EQSRGESVSG SESEASDYSS SLLLSLEDEP 360 LLASGRESNR SYDNSLELIG VDSDEINNGE VVCRPRQRAA VDYIKLYDEM FGKNAAESEQ 420 ISDDEDWGPT KRKRKGKEND AASTLMTLGE TDKINPEEMP SELKEKQLIN KIKRPIFRLP 480 HNAVEKLRLV FSENELPARA LRVSLSKQLG LEFEKVNKWF KNARYLALKA RKQAEKAQVS 540 QDVGPSIQKE SFSETTKDGH PDQMALENPK SSKELVRRRK AHLLTSSFKI KQRRKPLLQT 600 AESNQVLTTS RDLGDDVSLK HLREEAKEAK KKLNCKSRGG MTEAETEMER LCRIKNRVEE 660 LQQVLLQLPS WRFGKTSATN SSDVSVIYVP VAELREKSTQ CTRRGALAHI IHINFQGNRT 720 KC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 107 | 112 | KRRRRR |
2 | 108 | 116 | RRRRRKKRK |
3 | 110 | 115 | RRRKKR |
4 | 110 | 116 | RRRKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011094098.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By pathogen infection. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020553235.1 | 0.0 | pathogenesis-related homeodomain protein isoform X1 | ||||
Refseq | XP_020553237.1 | 0.0 | pathogenesis-related homeodomain protein isoform X1 | ||||
Refseq | XP_020553238.1 | 0.0 | pathogenesis-related homeodomain protein isoform X1 | ||||
Swissprot | P48785 | 1e-149 | PRH_ARATH; Pathogenesis-related homeodomain protein | ||||
TrEMBL | A0A022PTS2 | 0.0 | A0A022PTS2_ERYGU; Uncharacterized protein | ||||
STRING | Migut.J00799.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10684 | 21 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.2 | 2e-98 | pathogenesis related homeodomain protein A |
Publications ? help Back to Top | |||
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