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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011093698.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | HRT-like | ||||||||
Protein Properties | Length: 398aa MW: 44393.7 Da PI: 10.323 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 51.1 | 2.2e-16 | 273 | 303 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+ +GsvC+++PvkgRKRC+ HKGmR+ XP_011093698.1 273 ICGVAVCHGSVCTTPPVKGRKRCAIHKGMRV 303 8*****************************7 PP | |||||||
2 | HRT-like | 53.7 | 3.5e-17 | 356 | 386 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG+il+dGs+Ck++P + +KRC eHKG+Ri XP_011093698.1 356 ICGFILDDGSPCKMKPLQRNKRCLEHKGRRI 386 8*****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00719 | 0.00816 | 88 | 131 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:0097100 | Molecular Function | supercoiled DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MGVPTSSATS TTAARLKRED FRRTKHDSAF SQWKILIGAH DWQDHSMGKE GAEKYRTQNL 60 PNWISCPGVY ELGIATSRPR SGREARKLES SSVVPVYLGQ ADNLRTRLQQ YGRDGAHLEN 120 GCSNNKLRNF QGVSSSKEPG LFIDVFSRGL PIVYRCAPMK SKKDAEITEK QLLDKFDYAW 180 NKGSNGGRRH DDICRKLDSL AKSSQFSYLA KKLLSFNQKK VGIKIRTYEP CVSKDGSNLS 240 NMDNNVTISR IFGIKRLQPT KLQYGSDDNC SDICGVAVCH GSVCTTPPVK GRKRCAIHKG 300 MRVNGYISKL NAEGKGPSVA VNVGSSIRPN RLSADLQDPR LTHSREIPNN EIFAPICGFI 360 LDDGSPCKMK PLQRNKRCLE HKGRRIRVCQ PKKFVTEG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011093698.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093698.1 | 0.0 | protein EFFECTOR OF TRANSCRIPTION 2 | ||||
TrEMBL | A0A022QF58 | 1e-172 | A0A022QF58_ERYGU; Uncharacterized protein | ||||
STRING | Migut.J00591.1.p | 1e-173 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7741 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 1e-82 | effector of transcription2 |