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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011092848.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | DBB | ||||||||
Protein Properties | Length: 177aa MW: 19805.4 Da PI: 6.6404 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.2 | 7.2e-08 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++lfC ++ lC+ C ++ H XP_011092848.1 4 LCDVCESAAATLFCAADEAALCRACDDKVH 33 7**************************998 PP | |||||||
2 | zf-B_box | 27.9 | 4.8e-09 | 52 | 92 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 e ++C+ +e+ ++ ++Ce +++ lC +C + H g H+ XP_011092848.1 52 EVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtHR 92 789***************************99966666776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.21 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 7.0E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.39E-6 | 3 | 34 | No hit | No description |
Pfam | PF00643 | 1.5E-6 | 3 | 42 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.229 | 51 | 96 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.0E-11 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 8.8E-7 | 52 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.67E-7 | 54 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MRTLCDVCES AAATLFCAAD EAALCRACDD KVHTCNKLAS RHIRVGLAEL SEVPRCDICE 60 NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HRRYLLLRQR VEFPGNDKPG SREELGSQKG 120 RLREKENLQN HRFSPNSFIG NSSESDEKME DFLIDLNARP PGLYDRAANN QVLQRGA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011092848.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011092847.1 | 1e-125 | B-box zinc finger protein 19 isoform X3 | ||||
Swissprot | C0SVM5 | 2e-71 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A2G9G0M3 | 3e-85 | A0A2G9G0M3_9LAMI; Uncharacterized protein | ||||
STRING | Migut.B00176.1.p | 2e-84 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 9e-74 | DBB family protein |