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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011088190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | HB-PHD | ||||||||
Protein Properties | Length: 715aa MW: 79146.1 Da PI: 4.6377 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 19.6 | 1.6e-06 | 676 | 708 | 12 | 44 |
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqV 44 +++L + F++n+yp ++ +e LAk+lgL+ +q+ XP_011088190.1 676 TQRLYASFNENQYPERAVKENLAKELGLKIQQI 708 789*************************99998 PP | |||||||
2 | PHD | 39.8 | 1e-13 | 317 | 372 | 1 | 51 |
SBTTTSSTCT..TSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgksde..egelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg++d +++++lCdg C++ fH+ Cl+++l +e++p g w+C+ C++k XP_011088190.1 317 FCAKCGSKDLplDNDIILCDGaCERGFHQFCLEPPLLKEDIPPGdeGWICPGCDCK 372 699****44455********66********************9999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 1.79E-13 | 307 | 375 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 1.7E-12 | 314 | 371 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.994 | 315 | 372 | IPR019787 | Zinc finger, PHD-finger |
Pfam | PF00628 | 4.8E-11 | 317 | 372 | IPR019787 | Zinc finger, PHD-finger |
CDD | cd15504 | 2.99E-27 | 317 | 369 | No hit | No description |
SMART | SM00249 | 1.9E-9 | 317 | 370 | IPR001965 | Zinc finger, PHD-type |
PROSITE pattern | PS01359 | 0 | 318 | 369 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.10.60 | 2.5E-8 | 656 | 708 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.55E-6 | 660 | 708 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.01E-5 | 665 | 708 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 715 aa Download sequence Send to blast |
MGLIKIGTQD PESNMIEPLE TSENLAQDPK SGPLTPANYK MDSETLVTET MEKKEVTGSQ 60 NFRKNIGSVE EISDQIKETG PNPEDISQNL DAEKEEPPLE SAKTLSVAQN LEVISQNGLT 120 NLENMCISPE AASANHGCGK LETVHIDETK NSGQLGTEDR GCSVQSRKRK AGLKSPVTSS 180 WVLRSKSQEK PKAPEPNENV KEDSANGEKK KRGRKKKPMQ KTTVNEFSRT KTHLRYLLHR 240 IKYEQSLIDA YSAEGWKGQS LDKLKPEKEL QRAKSHILRY KLKIRALIQR LDMSLAVGKL 300 PESLFDSHGE IDSEDIFCAK CGSKDLPLDN DIILCDGACE RGFHQFCLEP PLLKEDIPPG 360 DEGWICPGCD CKIDCIDMLK DFQGTKISHT DSWEKIFPEA AAAASGKTLD NGSGSSSDDS 420 DDDDYDPDKP DAVEKVEGDE SSSDESNYFS ASDDLAASLN NEKYLGLPSD DSEDDDFDPS 480 ALDPDKQAEQ ESSSSDFTSD SEDLGALLDD TEAGEDLGHI SPSSYQNQSS TGSKEENVKV 540 GGTKRQSLKD ELSYLLETSG EPVSGRRHVE RWDYKSLHDE TYGNSSSDSS DEDFVDTTAP 600 KRRRIDREKT EVTSPNKTPI TENNMKAKDE NQKESKHLRE RTRKNIGDTI ESSSKVGSAS 660 TGTKRSANKR LGEAITQRLY ASFNENQYPE RAVKENLAKE LGLKIQQITS GIKFR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 207 | 217 | EKKKRGRKKKP |
2 | 600 | 604 | KRRRI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011088190.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By pathogen infection. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088190.1 | 0.0 | pathogenesis-related homeodomain protein isoform X2 | ||||
Swissprot | P48786 | 1e-130 | PRH_PETCR; Pathogenesis-related homeodomain protein | ||||
TrEMBL | A0A022RBH9 | 0.0 | A0A022RBH9_ERYGU; Uncharacterized protein | ||||
STRING | Migut.B00404.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19510.1 | 2e-90 | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain |