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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011088187.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | HB-PHD | ||||||||
Protein Properties | Length: 835aa MW: 92832 Da PI: 4.7884 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 36.4 | 9e-12 | 676 | 717 | 12 | 53 |
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +++L + F++n+yp ++ +e LAk+lgL+ +qV+ WF N R XP_011088187.1 676 TQRLYASFNENQYPERAVKENLAKELGLKIQQVSKWFENARW 717 789************************************995 PP | |||||||
2 | PHD | 39.6 | 1.2e-13 | 317 | 372 | 1 | 51 |
SBTTTSSTCT..TSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgksde..egelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg++d +++++lCdg C++ fH+ Cl+++l +e++p g w+C+ C++k XP_011088187.1 317 FCAKCGSKDLplDNDIILCDGaCERGFHQFCLEPPLLKEDIPPGdeGWICPGCDCK 372 699****44455********66********************9999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 2.21E-13 | 307 | 375 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 2.1E-12 | 314 | 371 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.994 | 315 | 372 | IPR019787 | Zinc finger, PHD-finger |
Pfam | PF00628 | 5.8E-11 | 317 | 372 | IPR019787 | Zinc finger, PHD-finger |
CDD | cd15504 | 4.41E-27 | 317 | 369 | No hit | No description |
SMART | SM00249 | 1.9E-9 | 317 | 370 | IPR001965 | Zinc finger, PHD-type |
PROSITE pattern | PS01359 | 0 | 318 | 369 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.10.60 | 6.9E-14 | 656 | 716 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.42E-12 | 660 | 724 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 13.086 | 662 | 722 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.7E-9 | 664 | 726 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.75E-10 | 665 | 716 | No hit | No description |
Pfam | PF00046 | 2.6E-9 | 676 | 717 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 835 aa Download sequence Send to blast |
MGLIKIGTQD PESNMIEPLE TSENLAQDPK SGPLTPANYK MDSETLVTET MEKKEVTGSQ 60 NFRKNIGSVE EISDQIKETG PNPEDISQNL DAEKEEPPLE SAKTLSVAQN LEVISQNGLT 120 NLENMCISPE AASANHGCGK LETVHIDETK NSGQLGTEDR GCSVQSRKRK AGLKSPVTSS 180 WVLRSKSQEK PKAPEPNENV KEDSANGEKK KRGRKKKPMQ KTTVNEFSRT KTHLRYLLHR 240 IKYEQSLIDA YSAEGWKGQS LDKLKPEKEL QRAKSHILRY KLKIRALIQR LDMSLAVGKL 300 PESLFDSHGE IDSEDIFCAK CGSKDLPLDN DIILCDGACE RGFHQFCLEP PLLKEDIPPG 360 DEGWICPGCD CKIDCIDMLK DFQGTKISHT DSWEKIFPEA AAAASGKTLD NGSGSSSDDS 420 DDDDYDPDKP DAVEKVEGDE SSSDESNYFS ASDDLAASLN NEKYLGLPSD DSEDDDFDPS 480 ALDPDKQAEQ ESSSSDFTSD SEDLGALLDD TEAGEDLGHI SPSSYQNQSS TGSKEENVKV 540 GGTKRQSLKD ELSYLLETSG EPVSGRRHVE RWDYKSLHDE TYGNSSSDSS DEDFVDTTAP 600 KRRRIDREKT EVTSPNKTPI TENNMKAKDE NQKESKHLRE RTRKNIGDTI ESSSKVGSAS 660 TGTKRSANKR LGEAITQRLY ASFNENQYPE RAVKENLAKE LGLKIQQVSK WFENARWSFQ 720 HRSRVGSNSD EKPPEPQPTI STDNHSSNQN MELQESSALR AREHITEAKL DNLATNSCKE 780 NSGTRDTRKR RAKIDQAPDD IHVDDKTQEQ KMLVDMRSPQ PCSSKRQTRS SNSVA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 207 | 217 | EKKKRGRKKKP |
2 | 600 | 604 | KRRRI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011088187.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By pathogen infection. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088187.1 | 0.0 | pathogenesis-related homeodomain protein isoform X1 | ||||
Refseq | XP_011088188.1 | 0.0 | pathogenesis-related homeodomain protein isoform X1 | ||||
Swissprot | P48786 | 1e-142 | PRH_PETCR; Pathogenesis-related homeodomain protein | ||||
TrEMBL | A0A2G9G184 | 0.0 | A0A2G9G184_9LAMI; PHD Zn-finger protein | ||||
STRING | Migut.B00404.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7220 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19510.1 | 1e-89 | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain |