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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011087615.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 291aa MW: 32559.6 Da PI: 7.5349 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104.2 | 8.1e-33 | 76 | 132 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 + vrY+eClkNhAas+Gg+a+DGCgEfmps geegt +al+C+AC+CHRnFHR+eve XP_011087615.1 76 KMVRYRECLKNHAASMGGNATDGCGEFMPS-GEEGTLEALTCSACNCHRNFHRKEVEG 132 679**************************9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 6.0E-25 | 78 | 133 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 8.0E-30 | 78 | 130 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.9E-31 | 79 | 130 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.524 | 80 | 129 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.65E-19 | 214 | 279 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.9E-31 | 215 | 280 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.8E-27 | 218 | 274 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MELPSHQEGD EMPIPLNSMI HHHGHGHMIH HHDPASHIIP SSGGGPPHQI PSNGPPISHD 60 HEHDHDHDHE HLPFKKMVRY RECLKNHAAS MGGNATDGCG EFMPSGEEGT LEALTCSACN 120 CHRNFHRKEV EGEPSSCDGC YPNPRMGRKL FMGGHHNALA YHHHHHHGAP LISSRPVPPH 180 QMIMSYNMAG SLPSESDEHE DGGGGGGGVV VRPTPVVKKR FRTKFTQEQK EKMLSFAEKV 240 GWKIQKQEES VVQQFCQEVG VKRRVLKVWM HNNKHNLAKK NLNHSNPQNQ V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-24 | 219 | 276 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00258 | DAP | Transfer from AT2G02540 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011087615.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ042853 | 3e-58 | KJ042853.1 Sesamum indicum clone TilSSR_14054 microsatellite Sesame_14054 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087615.1 | 0.0 | zinc-finger homeodomain protein 4 | ||||
Swissprot | O64722 | 1e-75 | ZHD3_ARATH; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | F6HJZ6 | 1e-119 | F6HJZ6_VITVI; Uncharacterized protein | ||||
STRING | VIT_12s0035g01880.t01 | 1e-120 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5154 | 23 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 2e-66 | homeobox protein 31 |
Publications ? help Back to Top | |||
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