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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011085755.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 345aa MW: 37607.6 Da PI: 7.8216 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 110.5 | 9e-35 | 47 | 104 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 v+YkeClkNhAa+lGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre++e XP_011085755.1 47 VVTYKECLKNHAATLGGHALDGCGEFMPSPTSNpADPTSLKCAACGCHRNFHRREPDE 104 589******************************9*********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 7.1E-29 | 48 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.9E-31 | 49 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-23 | 50 | 100 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.418 | 50 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 4.1E-19 | 195 | 262 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-30 | 197 | 263 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.2E-26 | 201 | 258 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MDLTNSTVKT PDAETETPTR IQPAKASPFT NGVLKRHPPL HLHHPVVVTY KECLKNHAAT 60 LGGHALDGCG EFMPSPTSNP ADPTSLKCAA CGCHRNFHRR EPDESLLPAP PNATPALEYR 120 PHHRHHPPPP PPPPPPPRGN SGSSPNNSPS PPPISSSYYP SAPHMLLALS HGLSGRPPDS 180 GTPISGGINA SSVPLLNSNS RKRFRTKFTQ DQKEKMFEFA ERVGWKMQKR DEDVISEFCS 240 EIGVDKGVFK VWMHNNKNTF GKKDQHQPQL SNTTTTAPPA ATTNGSGINF GSASEEGHYH 300 HHQQHEENYD SKENVHGQEL SHHHQLHDNS STAHILGTNG SSSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-22 | 200 | 259 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011085755.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011085755.1 | 0.0 | zinc-finger homeodomain protein 9 | ||||
Swissprot | Q9LXG0 | 2e-77 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A2G9HG83 | 1e-148 | A0A2G9HG83_9LAMI; Uncharacterized protein | ||||
STRING | XP_009620291.1 | 1e-105 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1088 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 3e-35 | homeobox protein 34 |
Publications ? help Back to Top | |||
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