PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085663.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family TCP
Protein Properties Length: 329aa    MW: 36303.5 Da    PI: 8.3828
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085663.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP137.21.4e-42872182125
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssasec.eaesssssasnss 86 
                     +++kdrhski+T++g+RdRRvRls+ +a++fFdLq++LGfdk+skt++WLl+++k+aik+l++t         ssss+sec e++ +s +++++s
  XP_011085663.1  87 TPRKDRHSKIYTAQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTAIKDLVQTkrnagsggkSSSSPSECeEESGESFENGADS 181
                     79******************************************************************999986666689955555555555666 PP

             TCP  87 sgkaaksaakskksqksaasalnlakesrakarararer 125
                     +gk+a  ++k+  +++++a   nlakesr + +++ r++
  XP_011085663.1 182 KGKSAILKNKGGMDPQQTA--VNLAKESRLSTDQTCRNS 218
                     7777777778888888888..********8888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.8E-3788197IPR005333Transcription factor, TCP
PROSITE profilePS5136936.64189147IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MFSKNNYLLQ QQVSPSLHSR ASTSSFDLNG AEILLHHHHQ MLAGHYMAAN APVLDAATLF  60
NQDLPGSCLN GGDPNSAFLN MGSRKQTPRK DRHSKIYTAQ GPRDRRVRLS IGIARKFFDL  120
QEMLGFDKPS KTLDWLLTKS KTAIKDLVQT KRNAGSGGKS SSSPSECEEE SGESFENGAD  180
SKGKSAILKN KGGMDPQQTA VNLAKESRLS TDQTCRNSTV CYDLNPSIPI HNNSSSLNMD  240
LHCPLTYEAA AANEDLTQES IVIKRKVKHP SIFGFHQQNL MVWRDSSSNC SIPSPYTVTE  300
NWDISSFTSQ SNLSAILDQH KFNHSTSNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1494147154Putative transcription factor PCF6
5zkt_B2e-1494147154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:10571179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085663.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5267961e-115KM526796.1 Sesamum triphyllum TCP transcription factor (CYC2B) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020551451.10.0transcription factor DICHOTOMA-like
SwissprotQ9SNW87e-78DICH_ANTMA; Transcription factor DICHOTOMA
TrEMBLA0A2S1UFJ41e-113A0A2S1UFJ4_9LAMI; CYC
STRINGMigut.H00528.1.p7e-83(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43332244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.23e-29TCP family protein
Publications ? help Back to Top
  1. Luo D, et al.
    Control of organ asymmetry in flowers of Antirrhinum.
    Cell, 1999. 99(4): p. 367-76
    [PMID:10571179]