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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011083674.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 255aa MW: 27895.4 Da PI: 9.336 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.9 | 4.3e-32 | 54 | 109 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++ Y+eClkNhAas+Gg+++DGCgEfmps geegt +alkCaAC+CHRnFHR+e++ XP_011083674.1 54 RISYRECLKNHAASIGGNVTDGCGEFMPS-GEEGTLEALKCAACNCHRNFHRKEHHG 109 679*************************9.999********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.5E-29 | 55 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-23 | 55 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.7E-30 | 57 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.961 | 57 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.83E-19 | 176 | 250 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-30 | 185 | 250 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.3E-30 | 189 | 245 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MSSIPGEDKE MRMQAPSLGY NINSLENPIS APEKARTLDP NSGGSKSNKP TNLRISYREC 60 LKNHAASIGG NVTDGCGEFM PSGEEGTLEA LKCAACNCHR NFHRKEHHGE SAAAAAMVHP 120 LQLPAPLPSP SMSQHRATHW SSMVQPVKMA FGSGGGGGSA GTDSSSAQLN FNAFHSNAVA 180 PPPPQFVTKK RFRTKFTAEQ KEKMLEFAEK LGWRIPREDD TEVQRFCAEV GVKRQVFKVW 240 MHNNKSSSKK NPQEF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-27 | 188 | 247 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011083674.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083674.1 | 0.0 | zinc-finger homeodomain protein 5 | ||||
Swissprot | Q9M9S0 | 2e-60 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
Swissprot | Q9ZPW7 | 1e-60 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A2G9H6D1 | 1e-125 | A0A2G9H6D1_9LAMI; Uncharacterized protein | ||||
STRING | Migut.C00746.1.p | 1e-110 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 2e-61 | homeobox protein 31 |