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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011083607.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | DBB | ||||||||
Protein Properties | Length: 316aa MW: 34649 Da PI: 6.9176 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.6 | 5.2e-08 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +++ e+++fC ++ lC+ C H+ H+ XP_011083607.1 4 QCDVCDKDEASFFCVADEAALCAACDHRVHHAnklagkHQ 43 7******99******************9964446777776 PP | |||||||
2 | zf-B_box | 26.4 | 1.4e-08 | 54 | 92 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 +++ C+ ++e ++ lfC++++ lC++C +H+ Ht XP_011083607.1 54 QAPLCDICQERRAFLFCQQDRAILCRECDIPIHNAneHT 92 7899*****************************667876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.865 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.27E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 3.4E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.0E-6 | 4 | 44 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.2E-14 | 53 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.139 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 8.9E-7 | 54 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.64E-10 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MKIQCDVCDK DEASFFCVAD EAALCAACDH RVHHANKLAG KHQRFSLHHP SPKQAPLCDI 60 CQERRAFLFC QQDRAILCRE CDIPIHNANE HTQKHARFLL TGLRLSATSA LYSDSKSSAE 120 SAISKSQEPK AVHVSPSNAP STSKCTTAQS GGVAAPESCD KNNPQLMNGG SLMNTSVSSS 180 SISEYLMEML PGWHVEDFLD SSLPSPYGFC KNGEIDDLLP YWDADLGSNL SGFPTQKIGV 240 WVPQVPPPSP PLNQAQYQSH QSIELAFGAP NGAKEQYKGF TTNNIKSTRK WSEDSSFLVP 300 QITPPLSASK RLRTLW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011083607.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083607.1 | 0.0 | B-box zinc finger protein 21 | ||||
Swissprot | Q9LQZ7 | 1e-92 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A2G9I2D4 | 1e-146 | A0A2G9I2D4_9LAMI; Uncharacterized protein | ||||
STRING | Migut.C00787.1.p | 1e-119 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1463 | 23 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 6e-82 | salt tolerance homolog2 |