![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011083361.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 1076aa MW: 119019 Da PI: 7.0609 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.5 | 6.2e-41 | 157 | 234 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCevhska ++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ XP_011083361.1 157 VCQVDNCNEDLSTAKDYHRRHKVCEVHSKAGKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 234 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.1E-34 | 152 | 219 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.923 | 155 | 232 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.7E-37 | 156 | 235 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.4E-30 | 158 | 231 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:1.25.40.20 | 2.0E-5 | 249 | 275 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.0E-5 | 866 | 992 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 3.98E-5 | 867 | 963 | IPR020683 | Ankyrin repeat-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1076 aa Download sequence Send to blast |
MMEEVGAQVV APTVIHQTLS GRFCDSYPMA KKRGLPFHSS TYIHQNASDN WNPKSWDWDS 60 SRFVAKPLQC DEIHAGNGTQ VLPGLPRRNE LQNNAQNPRK PDHAAEDNEN LRLKLGGGDR 120 ARSDGGSGGV NFVEPQPVSR PNKRVRSGSP GGANYPVCQV DNCNEDLSTA KDYHRRHKVC 180 EVHSKAGKAL VGKQMQRFCQ QCSRFHPLSE FDEGKRSCRR RLAGHNRRRR KTQPEDSTTR 240 LLVPGSNDNN IDIVKLLAVL TRAQGNIEDR SGKVAPLPDK DQMIQILSKI SSLPLPADLA 300 ARLKGSIPNL ISSENQNQMN GKASSPATMD LLAILSATPG APSSDAFEIQ SQPSTEGSDS 360 EKTKSLCVDQ TASLNLQRGS MMEFPTVGEK TSTSYDSPME EVDFHVQETS PSLPLQLFTP 420 SPEDYRAVKS PSYRNFLSSG SSNPLEERSP VSSPPVVHNL FPMRTSREAM KDDHLSNSES 480 EIANVKATIS NECSTSLQLF RDSTLATENG SNRSSPYRAG YMSSSGSDHS PSSLNSDARD 540 RNGRIIFKLF DKDPSHLPGS LRSQIYNWLS NSPSEMESYI RPGCLVLSLY LSMPSFVWDH 600 LEENLLNYVN GLVKDIDVDF WGNGRFLVHT DRQMASHKDG KIRLCKSWRA LSTAELISVS 660 PLAVVGGQET SLLLRGRNLT APGTKIHCTH AAEYNIKQVP VASCLDTAYE EISLDCFKVD 720 VAASSVLGRC FIEVENSFRG TSFPVIIADN TICDELRLLE PEINGTEACD GILADHIQST 780 GTPRYREEVL HFLDELGWLF QRKHNSSLFG IPEYRLTRFK FLFIFSVEHD FCAVVKTLLE 840 ILLELNLGRT GLARESLEML SEIHLLNRAV KRRSRSMVDL LIHYSIVDST DTSEKFIFLP 900 NMAGPGGVTP LHLAACTSSS DDMVDALTSD PQEVGLRSWN TALDANGLSP YAYALMRNNH 960 TYNALVARKL ADRNNCQVSV SVTDEVGQFA LEMDKDKRTI SHLNQKQKSC SRCAVVAADG 1020 YKQRFPGSHG LLQRPYIHSM LLVAAVCVCV CVFLRGHPYI GCVGPFAWEN LGYGAS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-31 | 148 | 231 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 867 | 872 | RAVKRR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011083361.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083361.1 | 0.0 | squamosa promoter-binding-like protein 14 | ||||
Swissprot | Q8RY95 | 0.0 | SPL14_ARATH; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | A0A2G9GTF7 | 0.0 | A0A2G9GTF7_9LAMI; Uncharacterized protein | ||||
STRING | Migut.C00339.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12887 | 12 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G20980.1 | 0.0 | squamosa promoter binding protein-like 14 |
Publications ? help Back to Top | |||
---|---|---|---|
|