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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011083230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 260aa MW: 28927.9 Da PI: 9.6569 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 94.5 | 8.9e-30 | 63 | 117 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +v+Y eClkNhAa++Gg+a+DGCgEfm+ geegt++alkC+ACgCHRnFHR+ + XP_011083230.1 63 AVKYMECLKNHAAAIGGNATDGCGEFMAG-GEEGTIEALKCSACGCHRNFHRKIHI 117 689*************************9.999*******************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.6E-27 | 64 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.6E-28 | 65 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-20 | 65 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.68 | 66 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE pattern | PS00028 | 0 | 102 | 126 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:1.10.10.60 | 2.5E-27 | 180 | 247 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.79E-17 | 186 | 246 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 0.00273 | 188 | 244 | No hit | No description |
TIGRFAMs | TIGR01565 | 1.1E-27 | 188 | 244 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MSCNSPISHQ EPKPLLSLDH TNTADHQDAV LGAPASSMNT PTTAQVVDHP QKMMINKKSL 60 AGAVKYMECL KNHAAAIGGN ATDGCGEFMA GGEEGTIEAL KCSACGCHRN FHRKIHIHQH 120 HHHHHHQPSS SIIINSHDHA APHSVVLKKR KKKSTTSINY GVTADHHQFL TTSIKPAAEG 180 VSSELVTKRF RTKFSQEQKE KMLGFAEKCE WKLQKVDDSE VRSFCQEIGI KRKVLKVWMH 240 NNKYNFANKT KTLTTTTNIT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 9e-22 | 187 | 243 | 17 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 151 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011083230.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ047745 | 5e-63 | KJ047745.1 Sesamum indicum clone TilSSR_18946 microsatellite Sesame_18946 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083230.1 | 0.0 | zinc-finger homeodomain protein 3-like | ||||
Swissprot | Q9M9S0 | 6e-55 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A2G9HR66 | 8e-79 | A0A2G9HR66_9LAMI; Uncharacterized protein | ||||
STRING | Migut.H02547.1.p | 1e-68 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5154 | 23 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 2e-52 | homeobox protein 31 |