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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011082951.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | DBB | ||||||||
Protein Properties | Length: 134aa MW: 14685.1 Da PI: 8.008 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.8 | 3.9e-07 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC C l+ H g H++ pl XP_011082951.1 4 QCDVCEAAEAEVVCCADEAALCGGCDLKVHAGnklatkHQRLPL 47 7******99*********************88899999998775 PP | |||||||
2 | zf-B_box | 30.1 | 9.9e-10 | 51 | 94 | 2 | 39 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 ++kC+ ++e +fC +++ lC++C ++Hkg H++ XP_011082951.1 51 AMPKCDVCQEALGWFFCLEDRAVLCRKCDIATHKGscsqfsHQR 94 689********999*******************99999999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.897 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.58E-5 | 3 | 47 | No hit | No description |
SMART | SM00336 | 4.0E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.4E-5 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SuperFamily | SSF57889 | 5.23E-5 | 40 | 89 | No hit | No description |
PROSITE profile | PS50119 | 9.001 | 50 | 97 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.2E-6 | 50 | 97 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.6E-6 | 52 | 94 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.00E-5 | 53 | 97 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MKIQCDVCEA AEAEVVCCAD EAALCGGCDL KVHAGNKLAT KHQRLPLYPS AMPKCDVCQE 60 ALGWFFCLED RAVLCRKCDI ATHKGSCSQF SHQRLLLTGI RVGLGAKAKG NKQHVSEWSR 120 ILESVPLPSQ QTRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011082951.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011082951.1 | 3e-95 | B-box zinc finger protein 22-like isoform X2 | ||||
Swissprot | Q9SYM2 | 2e-47 | BBX22_ARATH; B-box zinc finger protein 22 | ||||
TrEMBL | A0A0R0HIT5 | 7e-49 | A0A0R0HIT5_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445HUC1 | 7e-49 | A0A445HUC1_GLYSO; B-box zinc finger protein 22 isoform C | ||||
STRING | XP_009625544.1 | 1e-48 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 2e-34 | light-regulated zinc finger protein 1 |