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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011082793.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | DBB | ||||||||
Protein Properties | Length: 251aa MW: 26846.8 Da PI: 4.9179 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.9 | 6.5e-06 | 4 | 46 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ ++ e++l C ++ lC+dC + H H++v+ XP_011082793.1 4 QCNVCGVAEANLLCCADEAALCRDCDQIVHAAnklagkHQRVQ 46 7******99******************99*6678888898876 PP | |||||||
2 | zf-B_box | 30.2 | 9.2e-10 | 52 | 94 | 1 | 37 |
zf-B_box 1 seerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 s+++kC+ ++e +fC +++ llC++C +++H H XP_011082793.1 52 SQKPKCDICQETTGYFFCLEDRALLCRKCDFSIHTAntlvsrH 94 5899*******99*********************654555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.741 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.52E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 2.4E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.5E-16 | 52 | 99 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.385 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.3E-7 | 53 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.25E-9 | 55 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MKIQCNVCGV AEANLLCCAD EAALCRDCDQ IVHAANKLAG KHQRVQLSNS SSQKPKCDIC 60 QETTGYFFCL EDRALLCRKC DFSIHTANTL VSRHQRFLLT GVKVGLEATE PGSSSSSGRT 120 HSHSNEKISG AETRPPTEGT TPISSSGQHS KHLPVQASMV GGISSADLPF TGGSAAGSTS 180 QWLLDEFLGF GDYNKNYNFM DNSSSMGDAD NSPILQATDQ EFEGDECIAQ APDTFWAVPE 240 ILSPPTASGL Y |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011082793.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020550623.1 | 1e-176 | B-box zinc finger protein 22-like isoform X2 | ||||
Swissprot | Q9SYM2 | 1e-70 | BBX22_ARATH; B-box zinc finger protein 22 | ||||
TrEMBL | A0A2G9G181 | 1e-128 | A0A2G9G181_9LAMI; Uncharacterized protein | ||||
STRING | XP_009625544.1 | 1e-110 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2892 | 23 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 2e-69 | light-regulated zinc finger protein 1 |