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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011079486.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | SBP | ||||||||
Protein Properties | Length: 986aa MW: 109946 Da PI: 6.13 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.3 | 3.3e-41 | 145 | 222 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C adls+ak+yhrrhkvCe+hska+++lv++++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+q+ XP_011079486.1 145 VCQVDDCGADLSKAKDYHRRHKVCEMHSKASKALVANQMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTQT 222 6**************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 7.6E-34 | 141 | 207 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.103 | 143 | 220 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.67E-38 | 144 | 225 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.2E-30 | 146 | 219 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 2.98E-7 | 745 | 874 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 3.3E-5 | 763 | 879 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 9.14E-7 | 764 | 874 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 986 aa Download sequence Send to blast |
MEEARFGAQP QLYYGMPSTD LRAMAKRGIE WDPNDWRWDG DLFIATPLHP TSSNFQSRQL 60 FPLQTQLTTT VASSNSCSSF SDELDQPTVK DNRELEKKRR VQDNNLSADN LTLNLGGRGY 120 AVSANTEPTT GKKTKLAAPT PNRAVCQVDD CGADLSKAKD YHRRHKVCEM HSKASKALVA 180 NQMQRFCQQC SRFHALQEFD EGKRSCRRRL AGHNKRRRKT QTENVSNSSP INDNQASGYL 240 LMSILKILSN MHSNRSNQTD DQDLLSHLLQ TLASQGPFRR NISAHLQESQ DLLNNLPSLG 300 NSESVPALLS NDSLGQRSMQ EHCTTTGDEM PRKIGDLQAS SQRPGIVLHT QATSQIYDQG 360 RETSGGRSKL NNFDLNDIYV DSDDGMDDIE RSTVPQGLGI GCPSWAQQES HQSSPPQTSG 420 NSDSASAQSP SSSSGEAQSH TDRIVFKLFG KEPSDFPIVL RAQIFDWLSH SPTDIESYIR 480 PGCVILTIYL RLSESSWEEL YCDLSSSLNR LLNIYDDVYF WSTGWIYARV QNQMAFVYNG 540 QVVVNTSLPL GTDNYTTILS VKPIAVASSG QAQFFVKGIN LSRPSTRLLC ALDGNYVEAS 600 TELVEHVDGL EGSVQYLKFS CSVPAVTGRG FIEVEDHGLS SSFFPFIVCE DDVCTEICML 660 EKEIELTDID NLHRGRFYAR NQAMEFIHEM GWLLHKLQSK LRFGHEGPNL GSFPFERFKY 720 LVEFSMDHDW CSVVNKLLDI LFYGIVSGGE QPFVKFALSE MGLLHRAVRR NSRSLVEMLL 780 RYVPEEVADE LSSEYQSLVE IDKSSLFRPD VAGPGGLTPL HVAAGRDGSE DILDALTDDP 840 GKVGIGAWKS ALDSTGFTPE DYARLRGHYS YIHLVQRKIN RRVSSGHVVV DISDTVSDSS 900 INQKPNMEPP ASFEIGIKGI QRPCGVCAQN MAYRTGSRTL LYRPAMLSML AIAAVCVCVA 960 ILMKSLPRVL FVFRPFSWEM LEYGSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-31 | 145 | 219 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00633 | PBM | Transfer from PK06791.1 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011079486.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011079486.1 | 0.0 | squamosa promoter-binding-like protein 1 | ||||
Swissprot | Q9SMX9 | 0.0 | SPL1_ARATH; Squamosa promoter-binding-like protein 1 | ||||
TrEMBL | A0A2G9I468 | 0.0 | A0A2G9I468_9LAMI; Uncharacterized protein | ||||
STRING | VIT_07s0005g02260.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1871 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 0.0 | squamosa promoter binding protein-like 1 |
Publications ? help Back to Top | |||
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