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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011075633.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 170aa MW: 19377.8 Da PI: 10.5496 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 25 | 4.5e-08 | 6 | 18 | 45 | 57 |
ZF-HD_dimer 45 ACgCHRnFHRrev 57 ACgCHRnFHRr+ XP_011075633.1 6 ACGCHRNFHRRDL 18 9**********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 7.2E-5 | 5 | 17 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 6.17E-19 | 70 | 144 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.9E-29 | 70 | 144 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 9.9E-25 | 83 | 139 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MGMLKACGCH RNFHRRDLPD YPPTPSFLAF RNPKRSSLSP SPPPPPPPFQ HRPYQLFTLS 60 TEAAAEDHHQ DPETPKAEHP VGRKRSRTKF SQEQKEKMHS FSEKVGWKLH KSDEAAVEEF 120 CRQVGVAKGV LRVWMHNNKT TFGRKATKIS SSSSSRNEES RKTDNRSGVD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 6e-20 | 84 | 141 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011075633.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ053325 | 2e-58 | KJ053325.1 Sesamum indicum clone TilSSR_24526 microsatellite Sesame_24526 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011075633.1 | 1e-124 | zinc-finger homeodomain protein 10-like | ||||
TrEMBL | A0A2G9HHY8 | 1e-47 | A0A2G9HHY8_9LAMI; Uncharacterized protein | ||||
STRING | Migut.L01294.1.p | 6e-48 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 1e-29 | homeobox protein 34 |