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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011074989.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | DBB | ||||||||
Protein Properties | Length: 334aa MW: 36342.5 Da PI: 7.1933 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.3 | 2.7e-07 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +e+ e++lfC ++ lC C H+ H+ XP_011074989.1 4 QCDVCEKDEASLFCVADEAALCTACDHRVHHAnklagkHQ 43 7******99******************9964446777776 PP | |||||||
2 | zf-B_box | 26.8 | 1.1e-08 | 54 | 92 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 +++ C+ ++e ++ lfC++++ lC++C + +Hk Ht XP_011074989.1 54 QAPLCDICQERRAFLFCQQDRAILCRECDVPIHKAnqHT 92 7899*****************************877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.993 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.21E-7 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 2.6E-5 | 4 | 44 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.7E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.011 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.0E-15 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.1E-7 | 54 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.40E-10 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MKIQCDVCEK DEASLFCVAD EAALCTACDH RVHHANKLAG KHQRFSLHYP SSKQAPLCDI 60 CQERRAFLFC QQDRAILCRE CDVPIHKANQ HTQKHARFLL TGVKLSAIAA LYSASQSSAE 120 SGSSTLTNNN VCDAASNFKS QESKNKPAPP IGPPMCAPST AKGTTGQSTQ AAGGQESSCA 180 RSGNVEMMNE GNLNGSISAS SISEYLIEML PGWHVEDFLD SSSNPSPSPY GFCKSGESDL 240 LQIWDADLAS SNMSGFPTEK VGSWVPQMHQ TQINQSYQST EMMGFGTTNG FRQQSKEFTA 300 NNVKPSRIRN EDNSFAVPQI RPSSAASKRS RTLW |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011074989.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011074989.1 | 0.0 | B-box zinc finger protein 20 | ||||
TrEMBL | A0A2G9HVZ6 | 1e-134 | A0A2G9HVZ6_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N03131.1.p | 1e-110 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1463 | 23 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39070.1 | 5e-54 | DBB family protein |