PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011073405.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family FAR1
Protein Properties Length: 664aa    MW: 77640 Da    PI: 6.3438
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011073405.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.91.2e-2161141288
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                     fYn YAk+ GF vr+s++ ++ +++e ++ ++ Cs  g++++++ +     r+r+etrtgC a++k +++++++w+++++eleHnH 
  XP_011073405.1  61 FYNCYAKQQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKRSEAS-----RPRPETRTGCPAMVKFRLMENKRWRIIEVELEHNHL 141
                     9***************99997.66779*************998877.....***********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1861140IPR004330FAR1 DNA binding domain
PfamPF105513.3E-24265358IPR018289MULE transposase domain
PROSITE profilePS509669.73552588IPR007527Zinc finger, SWIM-type
SMARTSM005757.3E-5563590IPR006564Zinc finger, PMZ-type
PfamPF044343.3E-4565586IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MDEVSLNGEA AYDDEAEGFE IDGECAMTEY VGQTGNVLLG ENPLPPAVGM EFESYDDVYY  60
FYNCYAKQQG FGVRVSNTWY RKSKERYRGK LSCSSAGFKK RSEASRPRPE TRTGCPAMVK  120
FRLMENKRWR IIEVELEHNH LTSSTSSKFY KSHRIMDLGS KRPLPIDGSE EVRKIRLFRT  180
VVIDTEDNGF SSFDEGDFRN NIDQSDDKLN LKQGDTQEML DFFTRMQLGS PSFFYVMDIN  240
EKGCLRNTFW AETRSRPAYG YFGDVIFIDT TTLIEKYEVP LVLFTGVNHH AQPMSLGCGL  300
VSSQTVESFT WLFRAWLTYM VGRPPQTVIT SQCKALQNAI SEVFPRAFHC LSLTNIMKKV  360
PSELGRLEEY DAIRKAFTRA VYHSSRVDEF EAAWEEMVQS YRLMDHKWLQ MLYEDRKRWI  420
PVYLKEVFLA GMFTVKENER LTSPFEEYLS PHTSLKQFFS SYDRALLEIN QRETISDLES  480
KNSNSMLKSR FYFELQLSRL YTNCIFKKFQ DEIEGMYTCY SIRQMNIDGS IVTYIVKEDI  540
QVEENWRETR DFKVTYNASD AEVLCACGLF NFRGYLCRHA LSVINQIGLE EIPPRYILAR  600
WRKDINRSYI FNHGWNGIDV NNPVHRYDNL YKCAIKVVEE GRQSHDRYKF TSQSLDEILN  660
KVRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011073405.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073405.10.0protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_011073406.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A2G9GNN80.0A0A2G9GNN8_9LAMI; Uncharacterized protein
STRINGMigut.I00751.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13471970
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6