PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011073399.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

FAR1

Protein Properties

Length: 698aa MW: 80654.2 Da PI: 8.5182

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011073399.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.1	1.2e-22	92	175	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YA+e+GFsvr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w++ ++ leHnH l XP_011073399.1 92 NYYNCYAREAGFSVRVKNSWFKRNSREKYGAVLCCSSQGFKRVKDVN-----RLRKETRTGCPAMMRMRLVDSKRWRILEVTLEHNHLL 175 69**************************************99988.....99*******************************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-19	92	175	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.4E-29	294	387	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.631	581	617	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	592	619	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence Send to blast
MPSFLMQSSQ YMQRRGCGER ECVFLLNMEE IPLHTEQTTD TLPCETPPGT NDGKAAFDDQ 60 NGNLEGNNSQ GRKEFVAPAV GMEFETYDDA YNYYNCYARE AGFSVRVKNS WFKRNSREKY 120 GAVLCCSSQG FKRVKDVNRL RKETRTGCPA MMRMRLVDSK RWRILEVTLE HNHLLGVKGY 180 KSIRSMGSGT KRKLSSNSEL EIQPVKLYRA LVIDTGGDGT SNFNIRQAKS SSDQPNQLNL 240 RKGDAQAMYN YLCRMQLTNP NFFYLMDLND EGRLRNVFWV DARARAANSY FGDVIFFDNT 300 CLSNRYEIPL VAFVGVNHHG QPVLLGCGLL ASETMESYIW LFKAWVTCTS GHPPQTIITD 360 RCKVLQSAVA DVFPKSHHRF GLSHIMRKVP EKLGGLRNYD AIRKALLKGV YEALKPFDFE 420 AAWGFMIQRF GVADNEWLRL LYEDRALWAP VYLKDTFFMG MAAAQPGETL NAFFDKYLHK 480 QTPLKEFLDK YELALQKKHK EEVIADMESR NSSPELKTRC SFELQLSKVY TRAIFKRFQL 540 EVEEMYSCFS TTQIHIDGPI TIFLVKERVL HDGNRREIRD FEVLYNRAAA EVRCICSCFN 600 FYGYLCRHAL CVLNFNGVEE IPSKYILSRW KKDYKRLYLP DHGADNADTE RVQWFNQLYR 660 SALQVVEEGV ISLDHYKVAL RAFEESLVRV HSLEKKHV

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence Send to blast

MPSFLMQSSQ YMQRRGCGER ECVFLLNMEE IPLHTEQTTD TLPCETPPGT NDGKAAFDDQ  60
NGNLEGNNSQ GRKEFVAPAV GMEFETYDDA YNYYNCYARE AGFSVRVKNS WFKRNSREKY  120
GAVLCCSSQG FKRVKDVNRL RKETRTGCPA MMRMRLVDSK RWRILEVTLE HNHLLGVKGY  180
KSIRSMGSGT KRKLSSNSEL EIQPVKLYRA LVIDTGGDGT SNFNIRQAKS SSDQPNQLNL  240
RKGDAQAMYN YLCRMQLTNP NFFYLMDLND EGRLRNVFWV DARARAANSY FGDVIFFDNT  300
CLSNRYEIPL VAFVGVNHHG QPVLLGCGLL ASETMESYIW LFKAWVTCTS GHPPQTIITD  360
RCKVLQSAVA DVFPKSHHRF GLSHIMRKVP EKLGGLRNYD AIRKALLKGV YEALKPFDFE  420
AAWGFMIQRF GVADNEWLRL LYEDRALWAP VYLKDTFFMG MAAAQPGETL NAFFDKYLHK  480
QTPLKEFLDK YELALQKKHK EEVIADMESR NSSPELKTRC SFELQLSKVY TRAIFKRFQL  540
EVEEMYSCFS TTQIHIDGPI TIFLVKERVL HDGNRREIRD FEVLYNRAAA EVRCICSCFN  600
FYGYLCRHAL CVLNFNGVEE IPSKYILSRW KKDYKRLYLP DHGADNADTE RVQWFNQLYR  660
SALQVVEEGV ISLDHYKVAL RAFEESLVRV HSLEKKHV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011073399.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073399.1	0.0	protein FAR1-RELATED SEQUENCE 6 isoform X1
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2G9GNK5	0.0	A0A2G9GNK5_9LAMI; Uncharacterized protein
STRING	VIT_09s0002g07400.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]