PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011073396.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

FAR1

Protein Properties

Length: 786aa MW: 90180.7 Da PI: 4.8246

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011073396.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.8	5.8e-21	179	262	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w++++++leHnH + XP_011073396.1 179 NYYNCYAKELGFGIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAS-----TRRKETRTGCLAMIRLRLVETNRWRLDEVKLEHNHLF 262 69**************************************98877.....8999*****************************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-18	179	261	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.8E-26	383	470	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.718	668	704	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.5E-5	678	702	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.5E-4	679	706	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 786 aa Download sequence Send to blast
MADDAVFSPA DEGLSSNSGI GITMEEGSEN SEELLDDEGE EDFEIGTNDL GDEGSQLLQE 60 KNNDLENAIQ QVLRIQRVDL ENDGVPVLGI HGVDLENGNE HVLEFESNGH EGNSERMLEI 120 PSTDKDSCSD QMLGVPGSDK ENATDADMAV MGGQTDTGGK SYLPPVEGME FESYDDAYNY 180 YNCYAKELGF GIRVKSSWTK RNSKEKRGAV LCCNCEGFKT MKEASTRRKE TRTGCLAMIR 240 LRLVETNRWR LDEVKLEHNH LFDHQRAQNS RSHKKMEAGA KRKFESAVDV EVRTIKLYRT 300 PAVDAVSCGS SSERELSNHV EMAKRLKLRN GDVVALYDYF RRAQLADPNF FYIMDLNDEG 360 YARNVFWIDS RSRAAYGYFG DMVIVDSTCL SNKHDIPLLS FSGLNHHGQP ILLGCSLLVD 420 ETFETYLWLM RAWLTCMIGR PPQTIITDQC KALQDAISEV FPRAHHCLCL PLVMKSIHEK 480 LGEVAESEIF QTVLNRTVYN SMKVEEFEMA WEEMIQHFAF RDHKWLQSLY EDRERWVPVY 540 LKDTFVAGIY SSEPGEYVAP FFHGYIHDQM TLNEFFSMYE LLQQKKIQKE ALDDLNSREF 600 RPVLRTRCNY ELQLSELYTK EIFLKFQEEV VLMSGCFSVT QIHANGPIFT YMIKERDAEG 660 DAREAKNFEV VYDKVGVDVR CICSCFNFRG YLCRHALSVL SYSGVEEIPI QYILTRWRKD 720 VERLYTPDLG SNNIDISNPV QWYDHLYRRA MQVVAEGMAS QDHHMVAWQA FKESLNKVRL 780 VAEKPV

Sequence ? help Back to Top

Protein Sequence Length: 786 aa Download sequence Send to blast

MADDAVFSPA DEGLSSNSGI GITMEEGSEN SEELLDDEGE EDFEIGTNDL GDEGSQLLQE  60
KNNDLENAIQ QVLRIQRVDL ENDGVPVLGI HGVDLENGNE HVLEFESNGH EGNSERMLEI  120
PSTDKDSCSD QMLGVPGSDK ENATDADMAV MGGQTDTGGK SYLPPVEGME FESYDDAYNY  180
YNCYAKELGF GIRVKSSWTK RNSKEKRGAV LCCNCEGFKT MKEASTRRKE TRTGCLAMIR  240
LRLVETNRWR LDEVKLEHNH LFDHQRAQNS RSHKKMEAGA KRKFESAVDV EVRTIKLYRT  300
PAVDAVSCGS SSERELSNHV EMAKRLKLRN GDVVALYDYF RRAQLADPNF FYIMDLNDEG  360
YARNVFWIDS RSRAAYGYFG DMVIVDSTCL SNKHDIPLLS FSGLNHHGQP ILLGCSLLVD  420
ETFETYLWLM RAWLTCMIGR PPQTIITDQC KALQDAISEV FPRAHHCLCL PLVMKSIHEK  480
LGEVAESEIF QTVLNRTVYN SMKVEEFEMA WEEMIQHFAF RDHKWLQSLY EDRERWVPVY  540
LKDTFVAGIY SSEPGEYVAP FFHGYIHDQM TLNEFFSMYE LLQQKKIQKE ALDDLNSREF  600
RPVLRTRCNY ELQLSELYTK EIFLKFQEEV VLMSGCFSVT QIHANGPIFT YMIKERDAEG  660
DAREAKNFEV VYDKVGVDVR CICSCFNFRG YLCRHALSVL SYSGVEEIPI QYILTRWRKD  720
VERLYTPDLG SNNIDISNPV QWYDHLYRRA MQVVAEGMAS QDHHMVAWQA FKESLNKVRL  780
VAEKPV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011073396.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073396.1	0.0	protein FAR1-RELATED SEQUENCE 8 isoform X1
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A2G9GPD8	0.0	A0A2G9GPD8_9LAMI; Uncharacterized protein
STRING	Migut.I00749.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]