PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011072931.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 748aa    MW: 84974.4 Da    PI: 8.5551
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011072931.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.9e-09464505240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W++eE ell ++ +++++g   +W+ I++++g+gR+ +q+
   XP_011072931.1 464 KPWSKEEIELLRKGMQKYPKGtsrRWEVISEYIGTGRSVEQI 505
                      69************************************9997 PP
2Myb_DNA-binding25.43.4e-08595638344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                      +W++  +  lv+a k ++++   +W+++a+ ++ g+t  qck ++
   XP_011072931.1 595 SWSAAQERALVQALKTFPKEtpqRWERVAAAVP-GKTVAQCKKKF 638
                      7********************************.********997 PP
3Myb_DNA-binding322.9e-10690737247
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                      ++W++  ++ l++a k ++++   +W+++a+ ++ g+t +qck ++ ++
   XP_011072931.1 690 DKWSEVQEKALIQALKTFPKDtnqRWDRVAAAVP-GKTVNQCKKKFTSL 737
                      69********************************.*********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.31E-2078178IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.2E-2095198IPR001623DnaJ domain
SMARTSM002711.3E-1499174IPR001623DnaJ domain
PROSITE profilePS5007618.41100182IPR001623DnaJ domain
CDDcd062573.21E-13100171IPR001623DnaJ domain
PfamPF002263.8E-17100179IPR001623DnaJ domain
PRINTSPR006252.0E-7105123IPR001623DnaJ domain
PRINTSPR006252.0E-7123138IPR001623DnaJ domain
PRINTSPR006252.0E-7154174IPR001623DnaJ domain
PROSITE patternPS006360159178IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.601.7E-6458507IPR009057Homeodomain-like
PROSITE profilePS500906.748458513IPR017877Myb-like domain
SMARTSM007178.3E-8462515IPR001005SANT/Myb domain
SuperFamilySSF466893.21E-8464507IPR009057Homeodomain-like
PfamPF002491.1E-7464505IPR001005SANT/Myb domain
CDDcd001678.45E-6465505No hitNo description
PROSITE profilePS5129311.109591646IPR017884SANT domain
SuperFamilySSF466892.92E-9592639IPR009057Homeodomain-like
SMARTSM007173.4E-9592644IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-5593638IPR009057Homeodomain-like
PfamPF002491.0E-6595638IPR001005SANT/Myb domain
CDDcd001677.91E-6595642No hitNo description
SuperFamilySSF466898.22E-11687739IPR009057Homeodomain-like
PROSITE profilePS5129311.025687742IPR017884SANT domain
SMARTSM007172.5E-11688740IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-7689737IPR009057Homeodomain-like
PfamPF002491.6E-9690737IPR001005SANT/Myb domain
CDDcd001677.66E-8691738No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    Send to blast
MAMASQKRVL LITYSQEIVD GQPIYLSSNS LPVKASKLEP AGHAFHAAAL RLIGHCVEAD  60
TDEDDEKEVS KEKEHVYIQS SDSYSTKGKK KSGSEAKQQD HYALLGLSHL RYLATEDQIR  120
KSYREAALRH HPDKQASLLL AEETEAAKQA KKDEIESHFK AIQEAYEVLI DPVRRRIYDS  180
TDEFDDEIPF DCAPQDFFKV FGPAFLRNGR WSVTQPVPTL GDDKTPLKEV DSFYNFWYSF  240
KSWREFPHAD EFDLEQAESR DHKRWMERQN AKLSEKARKE EYARIRTLVD NAYKRDPRIL  300
RRKEEEKAEK QRKKEAKLLA KKLQEEEAAK IAEEERQRKE EEEKRAAEAA LNQKKMKEKE  360
KKLLRRERTR LRTLSAPVLS EHLLGLTDDD VEGLCSTLDK EQLRSLCDQM EGKEGLDRAK  420
LLRVTLESDH KLKDEKEVEE KVKQNGSVAV NGQIPYGSNE KKEKPWSKEE IELLRKGMQK  480
YPKGTSRRWE VISEYIGTGR SVEQILKATK TVLLQKPDSA KAFDSFLEKR KPAQAIASPL  540
TTREVMQGLS NSNVAERQSS GPDNLPESSN PSGNSLNSDD STAGNGIASS SDQDSWSAAQ  600
ERALVQALKT FPKETPQRWE RVAAAVPGKT VAQCKKKFAL MKESFRNSTV AEKNITNLNG  660
SQDSSSHNEK CKSSADGEAE SGISSSSDED KWSEVQEKAL IQALKTFPKD TNQRWDRVAA  720
AVPGKTVNQC KKKFTSLKEN FRNKKNAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A7e-1919629920123Zuotin
5dje_B7e-1919629920123Zuotin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011072931.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072931.10.0dnaJ homolog subfamily C member 2-like
TrEMBLA0A4D9C3E50.0A0A4D9C3E5_SALSN; DnaJ-like protein subfamily C member 2
STRINGMigut.I00387.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95572225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-120DnaJ domain ;Myb-like DNA-binding domain