PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070997.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ZF-HD
Protein Properties Length: 295aa    MW: 31945.7 Da    PI: 7.9521
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070997.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer112.62e-3554110459
     ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                     v+YkeC+kNhAaslGghavDGCgEfmps++++ +++++lkCaACgCHRnFHRre+++
  XP_011070997.1  54 VTYKECMKNHAASLGGHAVDGCGEFMPSPSATpTDPTSLKCAACGCHRNFHRREPDS 110
                     89*****************************99********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-1854108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.3E-2954108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.7E-3155107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.24356107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.59E-19169241IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-30169242IPR009057Homeodomain-like
TIGRFAMsTIGR015659.6E-26180237IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MNLDLTPTST KSPDDTEIDT PPHTNGQPIN SLSFTNGEIN HHHRPPPPPP PLVVTYKECM  60
KNHAASLGGH AVDGCGEFMP SPSATPTDPT SLKCAACGCH RNFHRREPDS PTTAITPPFL  120
DFRHPPLSKR FSLSPSPPPP PPQPPLSYGA HLLFGLSTAV GAEEHHQAPV TPTAENPVGR  180
KRFRTKFSQE QKEKMHSFSE KLGWKMQKSD EVAVREFCQE IGVPKGVLKV WMHNNKNTFG  240
KKDTGGGGIA NGKVISLEIN SGGDGGRNSE ERKTENGNGV HQFHGSNNEP SSSSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-241812381875ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070997.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070997.10.0zinc-finger homeodomain protein 10
TrEMBLA0A2G9I2U81e-119A0A2G9I2U8_9LAMI; Uncharacterized protein
STRINGXP_010257380.16e-86(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.16e-63homeobox protein 34