PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011070353.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Nin-like

Protein Properties

Length: 989aa MW: 108269 Da PI: 5.6262

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011070353.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.5	3.2e-29	584	635	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ XP_011070353.1 584 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 635 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.484	570	655	IPR003035	RWP-RK domain
Pfam	PF02042	3.3E-26	587	635	IPR003035	RWP-RK domain
PROSITE profile	PS51745	25.474	894	976	IPR000270	PB1 domain
Pfam	PF00564	4.9E-18	894	975	IPR000270	PB1 domain
SuperFamily	SSF54277	1.14E-22	894	978	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.2E-26	894	975	No hit	No description
SMART	SM00666	1.6E-26	894	976	IPR000270	PB1 domain
CDD	cd06407	2.31E-37	895	975	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 989 aa Download sequence Send to blast
MKMPSEPEDE TTRQPAPAEV LMDLDLDLDG SWPLDQIFAA AAAASNPASP FLLSNSEQPC 60 SPLWAFSDDN NSGCFAAGAG FRLADSSRIL SYAGNPDTAT ESAVGNDDRK KLPSPFMGLM 120 PIDNPDGSCI IKERMTQALR YFKDLTEQHV LAQVWAPVKN GGRYMLTTSG QPFVLDPNSN 180 GLHQYRLVSL MYMFSVDGDT DGDLGLPGRV FRQKLPEWTP NVQYYSSKEF PRLNHALHYN 240 VRGTLALPVF EPSGQSCVGV LELIMTSQKI NYAPEVDKVC KALEAVNLKS SEILDHQSTQ 300 ICNEGRQNAL AEILEIITVV CETHTLPLAQ TWVPCRHGSV LANGGGFKKT CSSFDGSCMG 360 QVCMSTTDVA FYVVDARIWG FREACAEHHL QKGQGVAGRA FASHNVCFCQ DITEFCKTEY 420 PLVHYARMFG LKSSFAICLR SKHTGNDNYI LEFFLPPTIR SYEDQQTLLD SLLVTMKQHF 480 GSLRVASGKN LDDEWRSIEI IKASVDDKLN LRPDFAATSP PRPSSVPNGE TVQLDALEGQ 540 VVMTEFNATN IKGNVGSPTE VHNAASGGET KDTGKKPERK RGKAEKTISL EVLQQYFAGS 600 LKDAAKSLGV CPTTMKRICR QHGISRWPSR KINKVNRSLS KLKRVIESVQ GGEGTFNLTS 660 LATSSIPVTV GSISWAANLN GMNQQISPGS GPSEFQEEKK EVSITKAPGA DEQAEGSNHI 720 LGDRNVETQK LTHGAGFLPG ECSNRSRTGS GSREESTGTP TSQGSCQGSP CRRNETSPQN 780 DPVVSPIDEH HMKMGGSHEL VCQQTREINL SAAFPAPDNF MTVPEEPFGG MLVEDAGSSH 840 DLRNLCPAGE ALFDEHVTEY SWTKPPCADT IPKDRLAAPA DHMPRFASRP EVKTITIKAT 900 YREDIIRFRI PIDSGIVKLK EEVAKRLKLE LGTFDIKYLD DDHEWVLIAC DADLQECVDI 960 SRSSGSNIIR LLVHDIMANL GSSCESSGE

Sequence ? help Back to Top

Protein Sequence Length: 989 aa Download sequence Send to blast

MKMPSEPEDE TTRQPAPAEV LMDLDLDLDG SWPLDQIFAA AAAASNPASP FLLSNSEQPC  60
SPLWAFSDDN NSGCFAAGAG FRLADSSRIL SYAGNPDTAT ESAVGNDDRK KLPSPFMGLM  120
PIDNPDGSCI IKERMTQALR YFKDLTEQHV LAQVWAPVKN GGRYMLTTSG QPFVLDPNSN  180
GLHQYRLVSL MYMFSVDGDT DGDLGLPGRV FRQKLPEWTP NVQYYSSKEF PRLNHALHYN  240
VRGTLALPVF EPSGQSCVGV LELIMTSQKI NYAPEVDKVC KALEAVNLKS SEILDHQSTQ  300
ICNEGRQNAL AEILEIITVV CETHTLPLAQ TWVPCRHGSV LANGGGFKKT CSSFDGSCMG  360
QVCMSTTDVA FYVVDARIWG FREACAEHHL QKGQGVAGRA FASHNVCFCQ DITEFCKTEY  420
PLVHYARMFG LKSSFAICLR SKHTGNDNYI LEFFLPPTIR SYEDQQTLLD SLLVTMKQHF  480
GSLRVASGKN LDDEWRSIEI IKASVDDKLN LRPDFAATSP PRPSSVPNGE TVQLDALEGQ  540
VVMTEFNATN IKGNVGSPTE VHNAASGGET KDTGKKPERK RGKAEKTISL EVLQQYFAGS  600
LKDAAKSLGV CPTTMKRICR QHGISRWPSR KINKVNRSLS KLKRVIESVQ GGEGTFNLTS  660
LATSSIPVTV GSISWAANLN GMNQQISPGS GPSEFQEEKK EVSITKAPGA DEQAEGSNHI  720
LGDRNVETQK LTHGAGFLPG ECSNRSRTGS GSREESTGTP TSQGSCQGSP CRRNETSPQN  780
DPVVSPIDEH HMKMGGSHEL VCQQTREINL SAAFPAPDNF MTVPEEPFGG MLVEDAGSSH  840
DLRNLCPAGE ALFDEHVTEY SWTKPPCADT IPKDRLAAPA DHMPRFASRP EVKTITIKAT  900
YREDIIRFRI PIDSGIVKLK EEVAKRLKLE LGTFDIKYLD DDHEWVLIAC DADLQECVDI  960
SRSSGSNIIR LLVHDIMANL GSSCESSGE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011070353.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070353.1	0.0	protein NLP6 isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A2G9I7V1	0.0	A0A2G9I7V1_9LAMI; Uncharacterized protein
STRING	Migut.E00644.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]