PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0199s0037.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family CO-like
Protein Properties Length: 605aa    MW: 64992.2 Da    PI: 6.5601
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0199s0037.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.51.4e-083679340
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                           r C+ ++ +++q++C  ++ +lC+ C +  H+       H++v
  Sphfalx0199s0037.1.p 36 SRACDGCGVQRAQWYCAADEAYLCDRCDTGVHSAnsvawrHERV 79
                          578******99*********************667888888876 PP
2CCT67.63.5e-23556598143
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                           Rea++lRYkeKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+
  Sphfalx0199s0037.1.p 556 REARVLRYKEKRRTRLFSKKIRYEVRKLNAERRPRMKGRFVKR 598
                           9****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.2E-83481IPR000315B-box-type zinc finger
PROSITE profilePS5011910.2673481IPR000315B-box-type zinc finger
PfamPF006432.1E-73779IPR000315B-box-type zinc finger
CDDcd000216.21E-63781No hitNo description
PROSITE profilePS5101716.033556598IPR010402CCT domain
PfamPF062033.0E-17556598IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MMMGMMKNTS IGSSSKKSNS VQATAAASIA IAGQSSRACD GCGVQRAQWY CAADEAYLCD  60
RCDTGVHSAN SVAWRHERVR LAPNGAPLKM PKRSSSAASS HHLSKPYKNK GVAKEAAAAT  120
GHRQAQATPL LPPPPPLPTA TLVLPSRKRF RSMRPHPQRL RSSTTDHRAP SSKKVCKSSS  180
KASREVHEQK VKVEFVDACE ISCDEVVDNY DDDGGGEAPH EVPAFITVIQ DSHETSSQIS  240
LQQGYNVTGS RFLHEVVGHS ASDSDSSFLS GFFKGKAALA QGGGNLRVGG DAEGEDRFLV  300
PDSFEDCCCL DSGVDGATVS LIGGGGGNSE SSAVFIGGDI PGLVIDDFHG FDYGLNFDLA  360
IRGEEDFDLR VGGGAAAAAA SQDHGCFTST TCSDGSGSSF SSGVDQQQSW DLENCIPPTP  420
SPFARFFASS RVKTEEEEDV TKQTLQGPAE KLKKKAKEIL KCSLEGLSEE DLRHVPSLRL  480
DYEEVLNAWS DRGALWTDDD NLSGSQTVPS GEDSFNSGTP GSCTDMCLVP DTMSQEGNLD  540
GGARGTDDAS LSNEGREARV LRYKEKRRTR LFSKKIRYEV RKLNAERRPR MKGRFVKRIQ  600
LLSR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1566582RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.11e-24B-box type zinc finger protein with CCT domain