PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0027s0045.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family CO-like
Protein Properties Length: 594aa    MW: 63314.3 Da    PI: 5.7333
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0027s0045.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.91.3e-05334436
              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                            C+ ++e +++ +C  ++  lC +C  + H g
  Sphfalx0027s0045.1.p  3 AACDYCGEGRATVYCSADSARLCLSCDRHVH-G 34
                          57******99******************999.4 PP
2CCT64.43.4e-22536579144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           R+ a+lRYkeK+ktRkF+K+irYesRKa+A+ R+RvKGrFvk+ 
  Sphfalx0027s0045.1.p 536 RDSAMLRYKEKKKTRKFDKRIRYESRKARADVRKRVKGRFVKAG 579
                           899**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.385147IPR000315B-box-type zinc finger
SMARTSM003368.1E-7147IPR000315B-box-type zinc finger
CDDcd000219.46E-6547No hitNo description
PROSITE profilePS5101715.438536578IPR010402CCT domain
PfamPF062031.5E-16536578IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MEAACDYCGE GRATVYCSAD SARLCLSCDR HVHGANALSR RHLRTLLCDR CNLRPAAVRC  60
PVEKNVALCQ SCDWDSHGSS SSSSCSLLPS QHRRHALECF SGCPSAAELG SLWECDLVSV  120
ERSAAAAAAA PPNLAGFNNG SGYWGGKSGA LDSQISAGPS SASDAWRSSS AAQRSESSVP  180
DVRASPGKVA AFAAMSGAGP PVLAKSPLPA GPVMNGKGGH ESCKQQSRDT IVQQLHKLQV  240
LDPQVQQMQP PAVLRSKEHP SSLQSCPLLE PPKASMHQKQ LQQQQQPKAS PNQLHSNEQQ  300
QAADLQSSQS LDTQILVTSE TSQLRTEACN DGLIQGGDAF WRSSSCQQLW GQNMQDLGIC  360
EGEEEGDPCE GFSMADVDLS FDNYEDIFSS TQDLSSSSFD NLEAGCTSMG QDSAGEHMQS  420
IPESELFELT NGAMGGGSQP QVYEGGSAGQ GPGPPPSPEM SEVGMIIGTP GQRGHHDMEM  480
KVVMQRTGSS LSLSLSALSG DSSDYHDCAA ASSMFINADP PFGCTSPDSV SLTQARDSAM  540
LRYKEKKKTR KFDKRIRYES RKARADVRKR VKGRFVKAGQ PFDYDPIGTT QSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.13e-29B-box type zinc finger protein with CCT domain