PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0025s0141.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family CO-like
Protein Properties Length: 631aa    MW: 68708 Da    PI: 5.9765
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0025s0141.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.27.9e-092870440
              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40
                          r C+ ++ ++++++C  ++ +lC++C ++ H g       H++v
  Sphfalx0025s0141.1.p 28 RACDVCGIQRARWYCAADEAYLCAKCDTTVH-GanalalrHDRV 70
                          68*****************************.557888888776 PP
2CCT67.14.7e-23583626144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           R+a++lRYkeKr+tR+F+K+irYe+RK +Ae+RpR+KGrFvk++
  Sphfalx0025s0141.1.p 583 RQARVLRYKEKRRTRLFSKTIRYEVRKLNAERRPRMKGRFVKRT 626
                           99****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.6232572IPR000315B-box-type zinc finger
SMARTSM003365.4E-82572IPR000315B-box-type zinc finger
CDDcd000212.31E-62872No hitNo description
PfamPF006431.1E-62870IPR000315B-box-type zinc finger
PROSITE profilePS5101715.735583625IPR010402CCT domain
PfamPF062032.1E-17583625IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MAMKKKKMIM TTSSVQATAM AIAGRASRAC DVCGIQRARW YCAADEAYLC AKCDTTVHGA  60
NALALRHDRV RLAPHGVPLQ KSSSLKRSSS SSAVVVVSKH SKNGSAAAAS ASRPAAAAIV  120
VLTTDAEKQL LEAQTRTAPT TAVLDSKPVQ RCRARDHQVF PSRKRSRTSR PRPHHLRSLT  180
TCARGGGPPP RYNKIQKSSI KDEGMVQVKI ETVSDFMVRD LDLMIDDDEE AGRKKSFNGG  240
GAHEVPAFIT VMQEDHGHEF DEISPGGGGF APGFREGRSA SSDSFSPFFK GKAAAHAEDE  300
LSNDADQFLV PDCLDNCCGL DDSGVEICCD VDGTISLVVE EDSSVVKEEG DQEEEEEKIS  360
AVEEEDEFKL FSSKDLLLTS KDSGGGSTEF ESTDFASTDF GSPDFGGPRD IMCDEFGLNF  420
DFPLPPGSSD SFESETEDRV FSQAHAAAGI EQYQQHQQEP PSPFAKFLPG LVKLEGLYSG  480
KERVKKEAQE ILRCSLEALS EEDLRQLPSL RLDYEDVLNA WSDRGAFWMD PQRSRLLNSD  540
GSNAAAARME VRGMMVPVMS ADGEAAAAAA ATAMAAAAAE VGRQARVLRY KEKRRTRLFS  600
KTIRYEVRKL NAERRPRMKG RFVKRTSTSS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73870.19e-24B-box type zinc finger protein with CCT domain