PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.009G181900.2.p

Common Name

Sb09g024220, SORBIDRAFT_09g024220

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

NF-YC

Protein Properties

Length: 295aa MW: 32113.7 Da PI: 4.9554

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.009G181900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	56.3	7.1e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P rikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ s ++++++ +++dfl+++v + Sobic.009G181900.2.p 6 DTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITIRKGVKTVGSSHLKQCIQTYNVYDFLTEVVSK 86 5789************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	9.6E-24	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	9.48E-19	4	88	IPR009072	Histone-fold
Pfam	PF00808	1.7E-16	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YDITIRKGVK 60 TVGSSHLKQC IQTYNVYDFL TEVVSKVPDI GPSDVIADDK LGKRRKAEED GSEEELKRTR 120 NETESYTSNG RGRGRGRGRG RRGRGAWREV VTTHEQFAEN QSSKLASLKV EVADEVSNAT 180 EAKEATTPVS NARASIRNID LNLDPTDDED DVTVPPQAQL SAPATSSAAA TAGPGPSAAG 240 PGPSVPRSKE GAKLKDFLGA WGLPDMSNME MDPVQFALST NHRVEEDEDY DNED*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-21	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	139	RGRGRGRGRG
2	130	140	RGRGRGRGRGR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.15727	0.0	callus\| ovary\| pollen

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.009G181900.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU967616	0.0	EU967616.1 Zea mays clone 304857 dr1-associated corepressor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021303438.1	0.0	dr1-associated corepressor homolog
TrEMBL	C5Z0A2	0.0	C5Z0A2_SORBI; Uncharacterized protein
STRING	Sb09g024220.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-53	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Sobic.009G181900.2.p
Entrez Gene	8077043