PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.007G225600.1.p | ||||||||
Common Name | Sb07g029070, SORBIDRAFT_07g029070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | Trihelix | ||||||||
Protein Properties | Length: 317aa MW: 35390.3 Da PI: 5.5269 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 61.4 | 2.2e-19 | 24 | 110 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 W++ e+++Li+a++e++++lrrg+lk+++Weev++ + +++ +qC++k+e+l+kry+++ ++ s +pyf Sobic.007G225600.1.p 24 WSHVETMHLIDAYEERWTALRRGQLKAHQWEEVAAEVvarcaatpGVVAQRKTGTQCRHKLEKLRKRYRNEGARPVT------SLWPYF 106 *************************************9*9997655555578*****************98777764......68**** PP trihelix 83 dqle 86 ++++ Sobic.007G225600.1.p 107 RRMD 110 ***8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.6E-19 | 22 | 112 | No hit | No description |
SMART | SM00595 | 4.7E-5 | 31 | 117 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MMADDPPRRP PSALARKSAP AQPWSHVETM HLIDAYEERW TALRRGQLKA HQWEEVAAEV 60 VARCAATPGV VAQRKTGTQC RHKLEKLRKR YRNEGARPVT SLWPYFRRMD RLERGPLAAY 120 PAAAGSPPAA DGDEEDEEEE EEEEEEEDAQ EEEEEEEELV PRNNHTRSIN GIIREFGTGL 180 APRHPQLQLH APPSSITPST APPRKRVAYE AFQAKAAAAA KAKDDDDEAV EMAYGGGSSG 240 RGAGAQLSAV LRDFGEGVMR LERRRMEVQW EIERGWQEAD ARHARMLQDA QRQLRDTVAA 300 ACALPPKKAR RDHGDS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.15723 | 0.0 | ovary| panicle |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.007G225600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040453 | 0.0 | BT040453.1 Zea mays full-length cDNA clone ZM_BFc0095C18 mRNA, complete cds. | |||
GenBank | EU954325 | 0.0 | EU954325.1 Zea mays clone 1462507 hypothetical protein mRNA, complete cds. | |||
GenBank | KJ727853 | 0.0 | KJ727853.1 Zea mays clone pUT5898 trihelix transcription factor (THX8) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002445984.1 | 0.0 | trihelix transcription factor ASIL1 | ||||
TrEMBL | C5YJQ3 | 0.0 | C5YJQ3_SORBI; Uncharacterized protein | ||||
STRING | Sb07g029070.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10078 | 29 | 33 | Representative plant | OGRP13024 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 5e-19 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.007G225600.1.p |
Entrez Gene | 8055378 |