PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G066600.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family S1Fa-like
Protein Properties Length: 75aa    MW: 8171.9 Da    PI: 10.7353
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G066600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA135.21.6e-42574270
                  S1FA  2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                          +v+++e+ kGlnPG++vllvv+++ll+f+vgny+lyvyaqk+lPP+kkkPvskkklkreklkqGv++PGe
  Sobic.006G066600.3.p  5 NVVIEEVnKGLNPGMVVLLVVASFLLLFFVGNYVLYVYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE 74
                          67888888*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190135.0E-7674No hitNo description
PfamPF046892.9E-391074IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MAANNVVIEE VNKGLNPGMV VLLVVASFLL LFFVGNYVLY VYAQKTLPPK KKKPVSKKKL  60
KREKLKQGVS APGE*
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G066600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1848793e-86KF184879.1 Saccharum hybrid cultivar R570 clone BAC 082J13 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318200.12e-43DNA-binding protein S1FA2
RefseqXP_021318201.12e-43DNA-binding protein S1FA2
RefseqXP_021318202.12e-43DNA-binding protein S1FA2
RefseqXP_021318203.12e-43DNA-binding protein S1FA2
SwissprotQ7XLX64e-27S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLA0A1Z5RCL95e-43A0A1Z5RCL9_SORBI; Uncharacterized protein
STRINGSb06g015340.19e-43(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51543563
Representative plantOGRP50951322
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]