PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G380200.1.p
Common NameSb02g039710, SORBIDRAFT_02g039710
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family CAMTA
Protein Properties Length: 1031aa    MW: 114867 Da    PI: 5.5906
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G380200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1183.13.1e-57211362117
                  CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 
                           l+ ++rwl+++ei++iL n++k++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+ee
  Sobic.002G380200.1.p  21 LEAQNRWLRPTEICQILSNYKKFSIAPEPPNRPQSGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEE 109
                           5679************************************************************************************* PP

                  CG-1  91 nptfqrrcywlLeeelekivlvhylev 117
                           n++fqrr+ywlLee++ +ivlvhyle 
  Sobic.002G380200.1.p 110 NENFQRRTYWLLEESFMNIVLVHYLEI 136
                           ************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.68316142IPR005559CG-1 DNA-binding domain
SMARTSM010761.4E-7619137IPR005559CG-1 DNA-binding domain
PfamPF038597.8E-5122135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.0E-7442530IPR013783Immunoglobulin-like fold
SuperFamilySSF812963.32E-17444530IPR014756Immunoglobulin E-set
PfamPF018336.2E-6444517IPR002909IPT domain
CDDcd002042.89E-14622734No hitNo description
SuperFamilySSF484033.26E-18628736IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.4E-18636736IPR020683Ankyrin repeat-containing domain
SMARTSM002484300642671IPR002110Ankyrin repeat
PROSITE profilePS5029717.688642736IPR020683Ankyrin repeat-containing domain
PfamPF127961.0E-7648737IPR020683Ankyrin repeat-containing domain
SMARTSM002480.14675707IPR002110Ankyrin repeat
PROSITE profilePS500888.843675700IPR002110Ankyrin repeat
SMARTSM00248290714743IPR002110Ankyrin repeat
SMARTSM000150.038849871IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.828850879IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525405.31E-8850900IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.0055851870IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022872894IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.688873897IPR000048IQ motif, EF-hand binding site
PfamPF006128.5E-5875894IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1031 aa     Download sequence    Send to blast
MAEIRKYAMS NQPPDIPQIL LEAQNRWLRP TEICQILSNY KKFSIAPEPP NRPQSGSLFL  60
FDRKILRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYWL  120
LEESFMNIVL VHYLEIKGVK QSFNRAKEAE ENAGLSHADS PACSNSFASQ SQVASQSMDA  180
ESPISGQISE YEDAETDNSR ASSRYHPFTE MQQPVDGIMM GNLFGASAPS VSVNNLAAGY  240
LGEMQPTGAN LTNHFSTRND VASVFNETGS ELGGGPKASI DSVLLGEPFQ EYPGGFMDST  300
LYSSVATLGN SLDDGLQTFM SEALYTNNLT QKEVDALSAA GITSSKAEND GYTDQSVRYP  360
LLKQSSSDLF KMEPDGLKKF DSFSRWMNNE LPEVADLDIK SSSDAFWSTT ETVNVADGSS  420
IPINEQLDAF VVSPSLSEEQ LFSIIDVSPS WAYNGKKTKV LITGTFLAKK EDVENRRWSC  480
MFGDAEVSAE VLVDGSLRCY TPVHRSGRVP FYVTCSNRVA CSEVREFEFR DSETHYMDTS  540
DQHTTGINEM HLHIRLDKLL SLEQEDYEMY VLSNGNKSEL IDTINSLMLD DNLSNLALPF  600
DEKELSTVRD QNLEKQVKEK LYYWLIHKIH DDGKGPNVLG KEGQGAIHLV AALGYDWAIK  660
PIVAAGVNIN FRDIRGWTAL HWAASCGRER TVGALIANGA ASGPLTDPTQ QYPSGRTPAD  720
LASENGHKGI AGFLAESALT SHLSALTLKE SQGGNVEEIC GVTAPAAEDF AEPSSSQLAC  780
VNSQEESLKD SLGAVRKSTQ AAARIFQAFR VESFHRKKVI EYGDDDCGLS DERTLSLISL  840
RNPKPGHGDL HSAAVRIQNK FRGWKGRKEF MIIRQKIVKI QAHVRGHQVR KNYRKVVWSV  900
GIVEKVILRW RRKRRGLRGF QPEKQLEGPS WQIQPAKAEA EDEYDFLKDG RKQAEGRLQR  960
ALARVHSMNQ YPEARDQYRR LQACVNSLQE SQAMQDRMLA DSAGTDGGDF MAELEELCRD  1020
DGDAPMSTIS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G380200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0680350.0BT068035.1 Zea mays full-length cDNA clone ZM_BFb0021I11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308915.10.0calmodulin-binding transcription activator 3 isoform X1
TrEMBLA0A1B6QFQ90.0A0A1B6QFQ9_SORBI; Uncharacterized protein
STRINGSb02g039710.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains