PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G339800.1.p
Common NameSb02g036430, SORBIDRAFT_02g036430
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 969aa    MW: 106257 Da    PI: 8.346
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G339800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.94.3e-19469568198
                           EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                           f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d sg++W +++++  +++s++yvl+ G     +a +L++gD+v+F+++
  Sobic.002G339800.1.p 469 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDASGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQAMQLQAGDTVTFSRI 556
                           89**************************555566778***************9989999999***9.********************98 PP

                           SSSEE..EEEEE- CS
                    B3  86 grsefelvvkvfr 98 
                           +  e++l +++++
  Sobic.002G339800.1.p 557 D-PEGKLIMGFRK 568
                           7.77777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-30465574IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.15E-20466569IPR015300DNA-binding pseudobarrel domain
CDDcd100176.83E-23467568No hitNo description
PROSITE profilePS5086311.335469570IPR003340B3 DNA binding domain
SMARTSM010191.0E-21469569IPR003340B3 DNA binding domain
PfamPF023623.8E-16469568IPR003340B3 DNA binding domain
PROSITE profilePS5105014.128724774IPR011124Zinc finger, CW-type
PfamPF074962.7E-11729771IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 969 aa     Download sequence    Send to blast
MSSPAPPQQA PPAQPPPPPA AAPPTAVPTT VVSATPISVQ LPPIQPKPPP PQPQAQAQQQ  60
PPPGSASGPQ PPTPAQLLNL GPQPPLYRGP ICWNSYCKDP DPNSFGRRGW KVRSGPPYSV  120
YADLCGRCYS QFEQGIYCET FHSEEGGWRN CESCGRRVHC GCIVSIHKYQ LRDAGGVDCA  180
KCARSTRAAM APPSPVWTAP IHTSQNVSDR RDIPVKSWRP PAGQISSQWR QTNLWSMSSV  240
QSDLQQRLAF EFDRPSGSEK LLPGRTFIHA QERKFDDMHD RPTTPVGMNH IIRERDPNGH  300
GQPTNMDPAY SYTLYHRDGS HPNNLHDPSH PGGENDSLSS RKVAMPEAST SADAGFKLDS  360
HHPSNLKDDP PSLSVGLASN FASQNGQKDH IRIAPSQQQA QMASSSLQKQ FYSHTVTGYN  420
EFQAQLRNGR PRMDAKARSQ LLPRYWPRIT DQELQHLSSD SNSVITPLFE KMLSASDAGR  480
IGRLVLPKKC AEAYFPPISQ PEGLPLKVQD ASGKEWIFQF RFWPNNNSRM YVLEGVTPCI  540
QAMQLQAGDT VTFSRIDPEG KLIMGFRKAT NNSSEQEQIT KPANGAPATS EANGKVSGAD  600
SSPNAAVSRQ NKVNIETKSS SPVEQATALK MDKDGLTQKE GPGTASSSPG SVKRKTTNLG  660
QKNKRLRMDN EESMELKITW EEAQELLRPP PKAPSIVIVD GHEFEEYEEP PVLGRKTYFV  720
ADKSGSDHQW AQCEDCSKWR KLPIDALLPS KWTCSDNKWD PERSSCEHAQ EISMEELAEI  780
IPIKYAKKPK SRMESDAIDA SDGLDTLANL AILGEGEALP SQPTTKHPRH RPGCSCIVCI  840
QPPSGKGPKH KQTCTCNVCM TVRRRFRTLM LRREKKATTD TPRKKETGQS SEKVTQAVST  900
PPVASASATS PPRKADGNAD GAEDMAVDHK VTSSPVKNHI DLNIQPDRDD EQSPKSGTAG  960
LLSRDNPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A5e-644475762131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.4540.0callus| embryo| leaf| panicle| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G339800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0548470.0BT054847.1 Zea mays full-length cDNA clone ZM_BFb0181D20 mRNA, complete cds.
GenBankKJ7280340.0KJ728034.1 Zea mays clone pUT6177 ABI3VP1 transcription factor (ABI22) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460861.20.0B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A1B6QF040.0A0A1B6QF04_SORBI; Uncharacterized protein
STRINGSb02g036430.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-146HSI2-like 1