PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G456000.1.p

Common Name

Sb01g042850, SbDL, SORBIDRAFT_01g042850

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

YABBY

Protein Properties

Length: 207aa MW: 23226.8 Da PI: 8.4936

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G456000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	128.6	8.3e-40	1	149	1	162
YABBY 1 advfssseqvCyvqCnfCntila..vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnve 87 +d++s+se++Cyv+C++Cnt+la v vP + l+ +vtv+CGhC +l l+ + ++ s d+ l + + + n+ Sobic.001G456000.1.p 1 MDMVSQSEHLCYVRCTYCNTVLAlqVGVPCKRLMDTVTVKCGHCNNLSY--LSPRPPMVQPLSPTDHPLGPF--------QCQGPCNDC 79 57899**************9744778************99865..333332222222222233332........222223333 PP YABBY 88 keesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162 +++ ++ s ++e +pr+p v++PPek+ r Psaynrf++eeiqrika+ Pdi hreafs+aaknWa Sobic.001G456000.1.p 80 RRN-----QPLPLASPTSTELSPRMPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWAK 149 333.....33333355678889*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	8.7E-44	6	150	IPR006780	YABBY protein
SuperFamily	SSF47095	1.57E-8	92	151	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.1E-5	104	151	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010254	Biological Process	nectary development
GO:0010582	Biological Process	floral meristem determinacy
GO:0048479	Biological Process	style development

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MDMVSQSEHL CYVRCTYCNT VLALQVGVPC KRLMDTVTVK CGHCNNLSYL SPRPPMVQPL 60 SPTDHPLGPF QCQGPCNDCR RNQPLPLASP TSTELSPRMP FVVKPPEKKH RLPSAYNRFM 120 REEIQRIKAA KPDIPHREAF SMAAKNWAKC DPRCSTTAST ATSNSAPEPR VVPTPQVTEA 180 RFDLEDRAKE QVIESFDIFK QIERSI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.20934	0.0	ovary

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detected during flower and leaf development. Expression in the flower meristem in the early stage of flower development. When carpel primordia begin to form, specific and uniform expression in carpel primordia. Expression in the central region of the leaf plastochron 1 (P1) primordia. Detected up to P4 stage, hardly detected in the P5 leaves. {ECO:0000269\|PubMed:14729915}.

Functional Description ? help Back to Top
Source	Description
UniProt	Regulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269\|PubMed:14729915}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00220	DAP	Transfer from AT1G69180	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G456000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB470268	0.0	AB470268.1 Sorghum bicolor SbDL mRNA for DL related protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021307124.1	1e-152	protein DROOPING LEAF isoform X1
Swissprot	Q76EJ0	1e-113	YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBL	A0A1B6QPL9	1e-151	A0A1B6QPL9_SORBI; Uncharacterized protein
STRING	Sb01g042850.1	1e-148	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5951	36	57
Representative plant	OGRP9069	11	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	8e-50	YABBY family protein

Link Out ? help Back to Top
Phytozome	Sobic.001G456000.1.p
Entrez Gene	8056888

Publications ? help Back to Top
Ishikawa M, et al. The spatial expression patterns of DROOPING LEAF orthologs suggest a conserved function in grasses. Genes Genet. Syst., 2009. 84(2): p. 137-46 [PMID:19556707]