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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_14464.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | Trihelix | ||||||||
Protein Properties | Length: 107aa MW: 12267 Da PI: 9.815 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 66 | 8.2e-21 | 46 | 107 | 1 | 62 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkryk 62 +W+ +e+++L+ +r+e+++++ ++ + k lW+ v++km+++gf rs++qCk+kw+nl ryk Rsa1.0_14464.1_g00001.1 46 QWSIDETKELLGIREELDQTFMEATRTKLLWQVVAAKMADKGFARSAEQCKSKWKNLVSRYK 107 7************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 3.46E-20 | 45 | 107 | No hit | No description |
Pfam | PF13837 | 3.2E-16 | 46 | 107 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-4 | 46 | 103 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.805 | 47 | 103 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MDRRNPFHHH HQLHHLIQQQ QLPPPPQSTP AAMDLGGGGG GERIPQWSID ETKELLGIRE 60 ELDQTFMEAT RTKLLWQVVA AKMADKGFAR SAEQCKSKWK NLVSRYK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_14464.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240935 | 1e-128 | AC240935.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrF042C17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018469212.1 | 1e-75 | PREDICTED: trihelix transcription factor GT-3a | ||||
Swissprot | Q9SDW0 | 5e-38 | TGT3A_ARATH; Trihelix transcription factor GT-3a | ||||
TrEMBL | A0A397ZQE1 | 8e-53 | A0A397ZQE1_BRACM; Uncharacterized protein | ||||
STRING | Bo3g001460.1 | 7e-51 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2215 | 28 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01380.1 | 7e-39 | Trihelix family protein |