PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_04924.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 107aa MW: 12270.9 Da PI: 5.7487 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.3 | 1.2e-07 | 72 | 100 | 1 | 29 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk 29 ++++h +Er+RR ++ s f Lr+llP Rsa1.0_04924.1_g00004.1 72 KKMKHRDIERQRRLEVSSLFKSLRSLLPL 100 6899************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.74E-7 | 63 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.57E-6 | 69 | 100 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.6E-5 | 70 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.693 | 71 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.6E-5 | 72 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MDFVTSLFMP DLTDEDGLPF TDSFLSPLIS YQNHDVCNPI ADKNGVSKKK RSVCDTYGES 60 EANKGDDDRE SKKMKHRDIE RQRRLEVSSL FKSLRSLLPL QYIQVAI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_04924.1_g00004.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018453987.1 | 3e-73 | PREDICTED: transcription factor bHLH125-like | ||||
Swissprot | Q9LQ08 | 2e-46 | BH125_ARATH; Transcription factor bHLH125 | ||||
TrEMBL | A0A0D3E3T0 | 1e-56 | A0A0D3E3T0_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g028760.1 | 2e-57 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6228 | 18 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62975.1 | 9e-49 | bHLH family protein |
Publications ? help Back to Top | |||
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