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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_04673.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | Trihelix | ||||||||
Protein Properties | Length: 220aa MW: 25971.2 Da PI: 7.0056 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 52 | 1.8e-16 | 48 | 118 | 1 | 72 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 +W++++v+++i + +++++ + ++k +W+++ k+m erg + sp++C++k+++lnk ykki+++ +++t Rsa1.0_04673.1_g00002.1 48 KWMDEMVKLMIIVLFYLGDNDHKH-ARKSKWRSIFKFMDERGHHFSPQKCEDKFNDLNKLYKKINDMLGRGT 118 7*******9999999888776555.899***************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.1E-13 | 46 | 122 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MMIPSVHHNF SITEYKNGQR WTGQEDDGDG HNESNKSSTK ISPWGRVKWM DEMVKLMIIV 60 LFYLGDNDHK HARKSKWRSI FKFMDERGHH FSPQKCEDKF NDLNKLYKKI NDMLGRGTYC 120 DVNRDGDEHV KLQNEDLVDG DDYEEPNMYQ KDCGESYVGA SLGGELKRLR RNQNHEYLGH 180 PNHANKGYVP HLHKQWTKYK SLELEELKLQ IQTELMALER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_04673.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009104656.1 | 1e-54 | PREDICTED: uncharacterized protein LOC103830595 | ||||
Refseq | XP_013648723.1 | 1e-54 | uncharacterized protein BNAA07G21220D | ||||
TrEMBL | A0A397YV49 | 3e-53 | A0A397YV49_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CHM1 | 3e-53 | M4CHM1_BRARP; Uncharacterized protein | ||||
STRING | Bra003704.1-P | 5e-54 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6762 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76870.1 | 4e-36 |